Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302H04f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9539| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.1  
SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_9539| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1642

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/20 (55%), Positives = 17/20 (85%), Gaps = 2/20 (10%)
 Frame = +3

Query: 231 NLFSVICILHMSY--KCVII 284
           NLFS+ CILH+S+  KC+++
Sbjct: 616 NLFSIDCILHISFVRKCLVL 635


>SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1922

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 231 NLFSVICILHMSYKCVII*NGNIFVLNQFTIET 329
           N++  +C + + Y+C+I  +  I + N F I+T
Sbjct: 203 NIYVDVCDMFVKYECLIAISTEIQIANHFRIKT 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,200,283
Number of Sequences: 59808
Number of extensions: 227929
Number of successful extensions: 286
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)