Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302H04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068713-7|AAC17798.2|  359|Caenorhabditis elegans Hypothetical ...    29   1.5  
U55365-5|AAN84867.2|  350|Caenorhabditis elegans Serpentine rece...    28   3.5  
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p...    28   4.7  

>AF068713-7|AAC17798.2|  359|Caenorhabditis elegans Hypothetical
           protein T24A6.11 protein.
          Length = 359

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 389 CVFRSCQFIFNLNYTVYFIICMDCLNIINKNAE 487
           C+F+ CQ     N+   F+  +   +++NKN E
Sbjct: 301 CLFQHCQITCQKNFPTKFVDLLSLSHVVNKNIE 333


>U55365-5|AAN84867.2|  350|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 11 protein.
          Length = 350

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 401 SCQFIFNLNYTVYFIICMDCLNII 472
           SC F+ N + T+Y +IC+  LN +
Sbjct: 155 SCYFLRNASNTIYVVICLISLNAL 178


>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
           protein F40G12.3 protein.
          Length = 1099

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 404 CQFIFNLNYTVYFIICMDCLNIINKNAECCFFKFINVL 517
           C ++ + N T + I+      +I+ NAECCF + +N L
Sbjct: 112 CSWLSDKNQTYHAILS----EVISYNAECCFPEVVNYL 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,459,839
Number of Sequences: 27780
Number of extensions: 193638
Number of successful extensions: 376
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)