Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302H02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 193 2e-50
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 91 1e-19
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 90 2e-19
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 86 3e-18
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 73 3e-14
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 59 3e-10
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 47 1e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 46 3e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 43 2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 0.97
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 1.7
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 25 5.2
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 6.8
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 6.8
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 9.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 193 bits (470), Expect = 2e-50
Identities = 87/97 (89%), Positives = 93/97 (95%)
Frame = -1
Query: 515 YNFIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYS 336
YN IMKCDVDIRKDLY N VMSGGTTMYPGIADRMQKEI ALAPS++K+KI+APPERKYS
Sbjct: 279 YNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYS 338
Query: 335 VWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 225
VWIGGSILASLSTFQQMWISK+EYDESGPGIV+RKCF
Sbjct: 339 VWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 90.6 bits (215), Expect = 1e-19
Identities = 44/101 (43%), Positives = 67/101 (66%), Gaps = 6/101 (5%)
Frame = -1
Query: 512 NFIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERK 342
N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A ER
Sbjct: 333 NCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERS 391
Query: 341 YSVWIGGSILASLSTFQQMWISKEEYDESGP---GIVHRKC 228
Y+ W+GGSIL+SL TF Q+WIS++EY+E G ++ ++C
Sbjct: 392 YASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 89.8 bits (213), Expect = 2e-19
Identities = 40/98 (40%), Positives = 67/98 (68%)
Frame = -1
Query: 518 VYNFIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKY 339
++ I+ D+D+R LY+N V+SGG+T+ G +R E+ A++ ++KI A PER +
Sbjct: 283 LFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMH 342
Query: 338 SVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 225
+ W+GGSILASLSTF+++ I+ EEY ++ ++ R+ F
Sbjct: 343 NAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 86.2 bits (204), Expect = 3e-18
Identities = 41/91 (45%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Frame = -1
Query: 518 VYNFIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAP-STIKIKIIAPPER- 345
VY I+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S I +
Sbjct: 328 VYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASAT 387
Query: 344 KYSVWIGGSILASLSTFQQMWISKEEYDESG 252
+VW GGSILASL FQ +W+SK+EYDE G
Sbjct: 388 SNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 72.5 bits (170), Expect = 3e-14
Identities = 40/101 (39%), Positives = 63/101 (62%), Gaps = 12/101 (11%)
Frame = -1
Query: 518 VYNFIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAL--------APSTI---K 372
+++ I DVDIRK LY V+SGG++MY G+ R++KEI L P+ + K
Sbjct: 278 IFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFK 337
Query: 371 IKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 252
+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 338 VKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 59.3 bits (137), Expect = 3e-10
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 14/109 (12%)
Frame = -1
Query: 518 VYNFIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTI------------ 375
V N + +D+RK LY N V+SGG+T++ +R+Q+++ + I
Sbjct: 311 VDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSG 370
Query: 374 --KIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHR 234
+ +I+ ++ +VW GGS+LA F +K +Y+E G I R
Sbjct: 371 GVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 47.2 bits (107), Expect = 1e-06
Identities = 21/88 (23%), Positives = 45/88 (51%)
Frame = -1
Query: 512 NFIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSV 333
+ + + ++ ++ L +N +++GG PG+ R+++E+T++ P I +
Sbjct: 621 SILQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDA 680
Query: 332 WIGGSILASLSTFQQMWISKEEYDESGP 249
W G S + F+ +++EEY E GP
Sbjct: 681 WKGASEWSVTEKFKAAKVTREEYLEKGP 708
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 46.0 bits (104), Expect = 3e-06
Identities = 26/86 (30%), Positives = 42/86 (48%)
Frame = -1
Query: 488 DIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILA 309
+I+ L N V GG +PG R+ E+ +LAP+ ++K+ P + W S +
Sbjct: 314 NIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM- 372
Query: 308 SLSTFQQMWISKEEYDESGPGIVHRK 231
L + I++ EY E G I+ RK
Sbjct: 373 PLEHWNANKITRSEYSEHGANIMTRK 398
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 43.2 bits (97), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -1
Query: 479 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILA 309
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 308 SLSTFQQMWISKEEYDESGPGIVHRK 231
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 0.97
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -1
Query: 332 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 231
++GGSI+A S + + +++ EEY + GP +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 407 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 297
KEI++ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 169 ELGRAQHHTAPGSRGRAA*KHLRWT 243
E+ R++ H+ PGS+G A +L WT
Sbjct: 46 EISRSETHSIPGSKGEA---NLIWT 67
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 381 DHQDQDHRSPREEVLRMDRWIHPG 310
D D+ R+ E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.0 bits (52), Expect = 6.8
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -2
Query: 178 VRVLNATVSTLYLVIP--EN*TSNLTPSILM*FIVKFYINLISFLFLLYTRDRCGSQR 11
VR +A S +L P N SN TP+ + I K N+ S + L D C R
Sbjct: 575 VRFFHAIQSHFHLEGPIRYNMNSNCTPNSIASIIQKKSYNVSSITYELLNEDACALSR 632
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 340 YFLSGGAMILILMVEGARAVISFCILSAIPGY 435
Y +SGGA + +A +S CI +PGY
Sbjct: 412 YCISGGAAL----AASTQAFLSSCICPVLPGY 439
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,817,873
Number of Sequences: 5004
Number of extensions: 32738
Number of successful extensions: 95
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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