BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS302H02f (521 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 201 3e-52 Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 201 3e-52 Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 201 3e-52 X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 201 3e-52 X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 201 3e-52 X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 201 3e-52 U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 201 3e-52 U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 201 3e-52 U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 201 3e-52 X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 195 2e-50 Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 192 2e-49 AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 112 2e-25 AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 107 6e-24 Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 83 1e-16 AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 76 2e-14 U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 71 4e-13 U42436-1|AAF99891.1| 305|Caenorhabditis elegans Hypothetical pr... 49 2e-06 Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 43 2e-04 U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 43 2e-04 AF100306-10|AAC68926.1| 798|Caenorhabditis elegans Hypothetical... 29 2.7 AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 27 6.2 Z75545-1|CAB61025.1| 665|Caenorhabditis elegans Hypothetical pr... 27 8.1 AB000913-1|BAA21715.1| 665|Caenorhabditis elegans UNC-14 protein. 27 8.1 >Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical protein T04C12.6 protein. Length = 376 Score = 201 bits (490), Expect = 3e-52 Identities = 92/99 (92%), Positives = 96/99 (96%) Frame = -1 Query: 521 TVYNFIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERK 342 T YN IMKCD+DIRKDLYANTV+SGGTTMYPGIADRMQKEITALAPST+KIKIIAPPERK Sbjct: 278 TSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 337 Query: 341 YSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 225 YSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF Sbjct: 338 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376 >Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical protein T04C12.5 protein. Length = 376 Score = 201 bits (490), Expect = 3e-52 Identities = 92/99 (92%), Positives = 96/99 (96%) Frame = -1 Query: 521 TVYNFIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERK 342 T YN IMKCD+DIRKDLYANTV+SGGTTMYPGIADRMQKEITALAPST+KIKIIAPPERK Sbjct: 278 TSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 337 Query: 341 YSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 225 YSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF Sbjct: 338 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376 >Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical protein T04C12.4 protein. Length = 376 Score = 201 bits (490), Expect = 3e-52 Identities = 92/99 (92%), Positives = 96/99 (96%) Frame = -1 Query: 521 TVYNFIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERK 342 T YN IMKCD+DIRKDLYANTV+SGGTTMYPGIADRMQKEITALAPST+KIKIIAPPERK Sbjct: 278 TSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 337 Query: 341 YSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 225 YSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF Sbjct: 338 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376 >X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. Length = 376 Score = 201 bits (490), Expect = 3e-52 Identities = 92/99 (92%), Positives = 96/99 (96%) Frame = -1 Query: 521 TVYNFIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERK 342 T YN IMKCD+DIRKDLYANTV+SGGTTMYPGIADRMQKEITALAPST+KIKIIAPPERK Sbjct: 278 TSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 337 Query: 341 YSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 225 YSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF Sbjct: 338 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376 >X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. Length = 376 Score = 201 bits (490), Expect = 3e-52 Identities = 92/99 (92%), Positives = 96/99 (96%) Frame = -1 Query: 521 TVYNFIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERK 342 T YN IMKCD+DIRKDLYANTV+SGGTTMYPGIADRMQKEITALAPST+KIKIIAPPERK Sbjct: 278 TSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 337 Query: 341 YSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 225 YSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF Sbjct: 338 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376 >X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. Length = 376 Score = 201 bits (490), Expect = 3e-52 Identities = 92/99 (92%), Positives = 96/99 (96%) Frame = -1 Query: 521 TVYNFIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERK 342 T YN IMKCD+DIRKDLYANTV+SGGTTMYPGIADRMQKEITALAPST+KIKIIAPPERK Sbjct: 278 TSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 337 Query: 341 YSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 225 YSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF Sbjct: 338 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376 >U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4, isoform b protein. Length = 332 Score = 201 bits (490), Expect = 3e-52 Identities = 92/99 (92%), Positives = 96/99 (96%) Frame = -1 Query: 521 TVYNFIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERK 342 T YN IMKCD+DIRKDLYANTV+SGGTTMYPGIADRMQKEITALAPST+KIKIIAPPERK Sbjct: 234 TSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 293 Query: 341 YSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 225 YSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF Sbjct: 294 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 332 >U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4, isoform c protein. Length = 362 Score = 201 bits (490), Expect = 3e-52 Identities = 92/99 (92%), Positives = 96/99 (96%) Frame = -1 Query: 521 TVYNFIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERK 342 T YN IMKCD+DIRKDLYANTV+SGGTTMYPGIADRMQKEITALAPST+KIKIIAPPERK Sbjct: 264 TSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 323 Query: 341 YSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 225 YSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF Sbjct: 324 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 362 >U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4, isoform a protein. Length = 376 Score = 201 bits (490), Expect = 3e-52 Identities = 92/99 (92%), Positives = 96/99 (96%) Frame = -1 Query: 521 TVYNFIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERK 342 T YN IMKCD+DIRKDLYANTV+SGGTTMYPGIADRMQKEITALAPST+KIKIIAPPERK Sbjct: 278 TSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK 337 Query: 341 YSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 225 YSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF Sbjct: 338 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376 >X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. Length = 375 Score = 195 bits (475), Expect = 2e-50 Identities = 91/99 (91%), Positives = 95/99 (95%) Frame = -1 Query: 521 TVYNFIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERK 342 T YN IMKCD+DIRKDLYANTV+SGGTTMYPGIADRMQKEITALAP T+KIKIIAPPERK Sbjct: 278 TSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-TMKIKIIAPPERK 336 Query: 341 YSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 225 YSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF Sbjct: 337 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375 >Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical protein T25C8.2 protein. Length = 375 Score = 192 bits (467), Expect = 2e-49 Identities = 88/99 (88%), Positives = 93/99 (93%) Frame = -1 Query: 521 TVYNFIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERK 342 T Y IMKCDVDIRKDLYANTV+SGGT+M+PGIADRMQKEI LAPST+KIKIIAPPERK Sbjct: 277 TTYQSIMKCDVDIRKDLYANTVLSGGTSMFPGIADRMQKEIQHLAPSTMKIKIIAPPERK 336 Query: 341 YSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 225 YSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF Sbjct: 337 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375 >AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical protein Y53F4B.22 protein. Length = 374 Score = 112 bits (269), Expect = 2e-25 Identities = 48/94 (51%), Positives = 69/94 (73%) Frame = -1 Query: 506 IMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWI 327 IMKCDVD+R+ LY+N V+SGGTT++ G DR+ E+ +AP+ KI+I A ER WI Sbjct: 281 IMKCDVDLRQTLYSNIVLSGGTTLFKGFGDRLLGEMRKIAPADGKIRISASQERNSLTWI 340 Query: 326 GGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 225 GGSI+ASL TF++MW+ K+EY++ G +H++ F Sbjct: 341 GGSIVASLDTFRKMWLGKKEYEDMGASAMHKRFF 374 >AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical protein ZK616.4 protein. Length = 436 Score = 107 bits (256), Expect = 6e-24 Identities = 47/92 (51%), Positives = 62/92 (67%), Gaps = 3/92 (3%) Frame = -1 Query: 494 DVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIG 324 D+DIR L++N ++GG ++ G +R+ + P TIK+++ A P ERKY WIG Sbjct: 344 DIDIRPTLFSNVTVTGGNSLILGFTERLNYALATKCPPTIKLRVFAAPTQAERKYGAWIG 403 Query: 323 GSILASLSTFQQMWISKEEYDESGPGIVHRKC 228 GSIL SL TFQQMW+SK EYDESG IV +KC Sbjct: 404 GSILGSLGTFQQMWVSKAEYDESGKSIVEKKC 435 >Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical protein K07C5.1 protein. Length = 395 Score = 83.0 bits (196), Expect = 1e-16 Identities = 43/102 (42%), Positives = 62/102 (60%), Gaps = 13/102 (12%) Frame = -1 Query: 518 VYNFIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAL-----------APSTIK 372 ++ I D+D R D Y + V+SGGTTMYPG+ R++KE+ L A K Sbjct: 282 LFGCIQASDIDTRLDFYKHIVLSGGTTMYPGLPSRLEKELKQLYLDRVLHGNTDAFQKFK 341 Query: 371 IKIIAPPERKYSVWIGGSILASL--STFQQMWISKEEYDESG 252 I+I APP RK+ V++GG++LA+L Q W+SK+EY+E G Sbjct: 342 IRIEAPPSRKHMVFLGGAVLANLMKDRDQDFWVSKKEYEEGG 383 >AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex component protein 1 protein. Length = 425 Score = 75.8 bits (178), Expect = 2e-14 Identities = 39/109 (35%), Positives = 63/109 (57%), Gaps = 16/109 (14%) Frame = -1 Query: 521 TVYNFIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALA--------------- 387 T+ I +C +D+R+ LY N V+SGG+TM+ A ++Q+++ L+ Sbjct: 306 TIDTLIQQCPIDVRRGLYENIVLSGGSTMFKDFARKLQRDVKRLSDGRLQMSETLSGGRL 365 Query: 386 -PSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGI 243 P I +++I+ ++Y+VW GGS+LAS S F Q+ +K EY E GP I Sbjct: 366 KPKPIDVQVISHKMQRYAVWFGGSMLASTSEFYQVSHTKAEYMERGPSI 414 >U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical protein F42C5.9 protein. Length = 552 Score = 71.3 bits (167), Expect = 4e-13 Identities = 28/84 (33%), Positives = 56/84 (66%) Frame = -1 Query: 518 VYNFIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKY 339 ++ I++C +D R+ LY N ++GG ++ PGIA+++++E++ + P+TI ++ P R Sbjct: 456 IHEAILQCPIDSRRTLYRNIYLAGGASLMPGIAEKLEQELSTVVPNTIHTQVNISPWRYN 515 Query: 338 SVWIGGSILASLSTFQQMWISKEE 267 + ++G I+AS STF+ IS ++ Sbjct: 516 AAYLGAQIVASASTFEDSCISLQQ 539 >U42436-1|AAF99891.1| 305|Caenorhabditis elegans Hypothetical protein C49H3.8 protein. Length = 305 Score = 48.8 bits (111), Expect = 2e-06 Identities = 28/95 (29%), Positives = 53/95 (55%), Gaps = 10/95 (10%) Frame = -1 Query: 518 VYNFIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAL-APSTIKIKIIAP---- 354 ++ + KC +D+RK L+ N +++GG + PG+ R+++EI + + KI +I Sbjct: 194 LHKLVSKCPIDLRKKLFPNILLTGGVSTIPGLMKRLEQEIQVIDEKNNSKIAVIVKFYQF 253 Query: 353 PERK----YSVWIGGSILASL-STFQQMWISKEEY 264 E K + W+G S+L SL T ++ ++ EE+ Sbjct: 254 SEIKNTPLFVSWLGASLLGSLRETIERKSLTLEEW 288 >Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical protein C08B11.6 protein. Length = 418 Score = 42.7 bits (96), Expect = 2e-04 Identities = 23/95 (24%), Positives = 50/95 (52%), Gaps = 3/95 (3%) Frame = -1 Query: 518 VYNFIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKI---IAPPE 348 V I +C +R L N ++ GG++ +PG +R+++E+ ++ P+ + + + P+ Sbjct: 293 VIESICQCPEALRPALAENIIVIGGSSCFPGFRERLEREVRSMLPAEYGLNVSNDVINPQ 352 Query: 347 RKYSVWIGGSILASLSTFQQMWISKEEYDESGPGI 243 W G L L+ + WI+++++DE G + Sbjct: 353 T--HSWHCGQEL--LTASKVPWINRKDWDERGDSL 383 >U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related protein-like protein. Length = 418 Score = 42.7 bits (96), Expect = 2e-04 Identities = 23/95 (24%), Positives = 50/95 (52%), Gaps = 3/95 (3%) Frame = -1 Query: 518 VYNFIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKI---IAPPE 348 V I +C +R L N ++ GG++ +PG +R+++E+ ++ P+ + + + P+ Sbjct: 293 VIESICQCPEALRPALAENIIVIGGSSCFPGFRERLEREVRSMLPAEYGLNVSNDVINPQ 352 Query: 347 RKYSVWIGGSILASLSTFQQMWISKEEYDESGPGI 243 W G L L+ + WI+++++DE G + Sbjct: 353 T--HSWHCGQEL--LTASKVPWINRKDWDERGDSL 383 >AF100306-10|AAC68926.1| 798|Caenorhabditis elegans Hypothetical protein T24C4.7 protein. Length = 798 Score = 28.7 bits (61), Expect = 2.7 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = -3 Query: 432 PRYRRQDAEGDHRPRALDHQDQDHRSPREEVLR 334 P+YRRQ L Q Q HR PRE +L+ Sbjct: 181 PKYRRQVMHCSKSEHKLVLQTQKHRLPRERMLK 213 >AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical protein Y39B6A.1 protein. Length = 735 Score = 27.5 bits (58), Expect = 6.2 Identities = 17/66 (25%), Positives = 21/66 (31%) Frame = -3 Query: 507 HHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHRSPREEVLRMD 328 HH H G H H HH P + E H P H + H +P + Sbjct: 432 HHHAPAHH--GHHESHGHG---HHSPAHHGHHGEHHHAPAHHGHHGEHHHAPAHHGHHGE 486 Query: 327 RWIHPG 310 H G Sbjct: 487 HGTHHG 492 >Z75545-1|CAB61025.1| 665|Caenorhabditis elegans Hypothetical protein K10D3.2 protein. Length = 665 Score = 27.1 bits (57), Expect = 8.1 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = -3 Query: 390 RALDHQDQDHRSPREEVLRMDRW 322 R +D D + R EE++R DRW Sbjct: 134 RFVDVNDNEIREANEEIIRKDRW 156 >AB000913-1|BAA21715.1| 665|Caenorhabditis elegans UNC-14 protein. Length = 665 Score = 27.1 bits (57), Expect = 8.1 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = -3 Query: 390 RALDHQDQDHRSPREEVLRMDRW 322 R +D D + R EE++R DRW Sbjct: 134 RFVDVNDNEIREANEEIIRKDRW 156 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,306,841 Number of Sequences: 27780 Number of extensions: 198185 Number of successful extensions: 590 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 556 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 585 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1017709248 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -