Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302H01f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 30 0.18
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 28 0.73
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 27 1.3
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 1.3
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 27 1.7
SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch... 27 2.2
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 27 2.2
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 26 3.9
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 26 3.9
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 5.2
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 25 5.2
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 25 5.2
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi... 25 5.2
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 6.8
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy... 25 6.8
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 9.0
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 25 9.0
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi... 25 9.0
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 25 9.0
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 30.3 bits (65), Expect = 0.18
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +2
Query: 218 LEKNESAYIQNLSVLYSNRRRHRAC----LLKPLPNVTIPNISTNLSLEEYNSICGK 376
L ++ Y+Q L V + H+ C L+KP PN+ + +I+ L++++ + K
Sbjct: 185 LRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNK 241
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 28.3 bits (60), Expect = 0.73
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 239 YIQNLSVLYSNRRRHRACLLKPLPNVTIPNISTNLSL 349
Y++N ++LY N R CLL+ + + + N+ NL L
Sbjct: 426 YVRNQTILYVNLHDKRKCLLQGV--IELTNLGHNLEL 460
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 27.5 bits (58), Expect = 1.3
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Frame = +2
Query: 191 DELEGWPVFLEKNESAYIQNLSVLYS--NRRRHRACLLKPLPNVTIPNISTNLSLEEYNS 364
D+L F E + +L V +S N+R+ C++ + +P L L E
Sbjct: 1028 DDLASLKHFYEDPQIVACSSLGVYHSIFNKRKFDYCIIDEASQIPLPICLGPLQLAEKFV 1087
Query: 365 ICGKVLDICEARKSDCASEDGSTVVNAKLKEQK 463
+ G + K+ S+DG ++ KL +K
Sbjct: 1088 LVGDHYQLPPLVKNSRTSKDGLSLSLFKLLSEK 1120
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -1
Query: 320 WLHLVKVLAGTHDVVYGLSIEPIDFECKRSHSFLKILAILLTRRQCLRENYIRLLQ 153
W+H K + + L+ E EC+R+ F + LA + +C R ++ LQ
Sbjct: 555 WIHAAKSSYINYAKQFPLADETYKLECQRNTYFARWLAACRSDPRCRRLDFQHFLQ 610
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 50 EKMQEIIKYSKRLYFVPVAVISTKENDVV 136
E +E++KY L +PVA S+K+ D++
Sbjct: 598 EMYEEVLKYCLELKEIPVASNSSKKTDLI 626
>SPAC14C4.08 |mug5||meiotically upregulated gene
Mug5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 179
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 299 KPLPNVTIPNISTNLS-LEEYNSICGKVLDICEARKSDCASEDGSTVVNAKLKEQKTIYT 475
K L N+ ++S +L LEEYN+ C +L + + + ++ S + L+ + I
Sbjct: 97 KSLSNINFFSLSNDLKRLEEYNTSCSVLLSLYQRQLKKISTTIESYYLADTLRHNQNILN 156
Query: 476 L 478
L
Sbjct: 157 L 157
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1334
Score = 26.6 bits (56), Expect = 2.2
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +2
Query: 143 NLYFEA-SGCSSLVNIVDELEGWPVFLEKNESAYIQNLSVLYSNRRRHRACLLKPLPNVT 319
N +FE+ + CS+ +++ V+ Y + V S R+ + KP+ +
Sbjct: 979 NQWFESVTICSNFFVGDNKVNAIGVYDSGRRLLYGTDTGVYVSLRKANSPLQFKPVRALN 1038
Query: 320 IPNISTNLSLEEYN 361
IPNIS +EEY+
Sbjct: 1039 IPNISQLEVIEEYS 1052
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +2
Query: 305 LPNVTIPNISTNLSLEEYNSICGKVLDICEA 397
+P + I ++S +LSLE+YN ++ + +A
Sbjct: 561 IPRLWILSVSPSLSLEQYNKCMREIRSLSDA 591
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 11 ENQICTNWNKGAIEKMQEIIKYSKRLYFVPVAVISTKENDVV 136
EN + +KG + K E I Y + ++ ++ K ND V
Sbjct: 616 ENSEASTISKGVVLKYLETISYKVSIIYLEKLLLDNKFNDTV 657
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 299 KPLPNVTIPNISTNLSLEEYNSICGKVLDICEARKSD 409
+PL VT N ++N SLEE N+ V D+ E+ K +
Sbjct: 1165 EPLDVVTDDNTNSNFSLEETNA---SVTDMPESEKHE 1198
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 266 SNRRRHRACLLKPLPNVTIPNISTNLSLEEYN 361
S+R+ + L+P+ + +PNIS +EE+N
Sbjct: 851 SSRKSNNGSCLEPIFKLQLPNISQLDVIEEHN 882
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 269 LSIEPIDFECKRSHSFLKILAILLTRRQCLRENYIRLLQNTNFPT 135
+ I P DF SH+F A+ ++ Q E I ++ FPT
Sbjct: 568 MGISPADFIKVSSHAFYNARAMTVSTPQLPVEYVINGIKRRKFPT 612
>SPAC17A5.09c |||protein phosphatase regulatory subunit
Glc9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 272 RRRHRACLLKPLPNVTIPNISTNLSLEEYNSICGKVLDI 388
R++H + KPL + + T LE NS G D+
Sbjct: 266 RKKHYFAMAKPLKRDELESSGTESDLERDNSDSGSASDV 304
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 212 VFLEKNESAYIQNLSV-LYSNRRRHRACL 295
+FLE E Y Q V L S RR RACL
Sbjct: 11 LFLEAKEEEYKQRRRVPLDSRRRVRRACL 39
>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 35 NKGAIEKMQEIIKYSKRLYFVPVAVISTKENDVV 136
N A+E + E IKY + FV ++TKE ++
Sbjct: 96 NTVALENIYERIKYPDDISFVENQAVTTKEPIII 129
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 174 ELHPLASKYKFPNTTSF 124
+LHPL S+++FP + F
Sbjct: 471 KLHPLWSRFRFPKDSEF 487
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 9.0
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +2
Query: 302 PLPNVTIPNISTNLSLEEYNSICGKVLDICEARKSDCASEDGSTVVNAKLKEQK 463
P+PN+ IS SLEEY + D E RK ++ GS V + +K
Sbjct: 249 PVPNIKHAPISLTASLEEYLN----DPDFEENRKQYLQNKSGSPVEETAILNRK 298
>SPCC1183.04c |pet127||mitochondrial membrane protein
Pet127|Schizosaccharomyces pombe|chr 3|||Manual
Length = 524
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 201 SNSSTMFTRELHPLASKYKFPNTTSFS 121
++S T +LH SK+KFPN + S
Sbjct: 131 TSSLTGLMSQLHFFISKWKFPNFSDLS 157
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 47 IEKMQEIIKYSKRLYFVPVAVISTKENDVVLGNLYFEA 160
+ K+ +K S +LYF+P+ V + + D G L F+A
Sbjct: 1215 VVKLLRALKISHQLYFMPLCVYNFEFYD---GGLMFQA 1249
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,202,249
Number of Sequences: 5004
Number of extensions: 47426
Number of successful extensions: 185
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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