Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302H01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0393 + 17255315-17256019,17256107-17257909                       31   0.74 
05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928           28   4.0  
09_04_0696 - 19559227-19559622,19559710-19559862,19559957-195607...    27   9.1  

>09_04_0393 + 17255315-17256019,17256107-17257909
          Length = 835

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +2

Query: 296 LKPLPNVTIPNISTNLSLEEYNSICGKVLDICEARK 403
           L+PL N    N++  LSLEEYN +C KV D  ++ K
Sbjct: 656 LEPLANRKNNNVT--LSLEEYNVLCKKVQDAEDSAK 689


>05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928
          Length = 244

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 94  CSCGCYFYQRKRRSVGKFVF*SKRM 168
           C+CGC  ++  RRSV ++ +   RM
Sbjct: 197 CACGCCAFRNARRSVSEYPYGVNRM 221


>09_04_0696 -
           19559227-19559622,19559710-19559862,19559957-19560784,
           19561727-19561842,19562286-19562319
          Length = 508

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 209 PVFLEKNESAYIQNLSVLYSNRRRHRACLLKPLPNVTIPNIST 337
           P+ L   ES+ ++NLS+ YS+   H AC    LP +  PN+ T
Sbjct: 280 PIQLSFGESSLVKNLSIGYSSVLNH-AC--AELPYI-FPNLET 318


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,107,015
Number of Sequences: 37544
Number of extensions: 258639
Number of successful extensions: 703
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)