Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302H01f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_41824| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_42283| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_39427| Best HMM Match : Ribosomal_L29e (HMM E-Value=3.9) 29 3.1
SB_51045| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_1555| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_45951| Best HMM Match : DinI (HMM E-Value=2.2) 28 5.4
SB_40943| Best HMM Match : Exo_endo_phos (HMM E-Value=9.2e-07) 28 5.4
SB_28479| Best HMM Match : Exo_endo_phos (HMM E-Value=0.087) 28 5.4
SB_22621| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_18159| Best HMM Match : DinI (HMM E-Value=2.2) 28 5.4
SB_11944| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012) 28 5.4
SB_4662| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_59344| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_58157| Best HMM Match : RVT_1 (HMM E-Value=1.6e-36) 28 5.4
SB_57293| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_54746| Best HMM Match : RVT_1 (HMM E-Value=8.4e-11) 28 5.4
SB_49755| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1) 28 5.4
SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_32894| Best HMM Match : DinI (HMM E-Value=2.2) 28 5.4
SB_30180| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_28837| Best HMM Match : DinI (HMM E-Value=2.2) 28 5.4
SB_26985| Best HMM Match : DinI (HMM E-Value=2.2) 28 5.4
SB_26941| Best HMM Match : Exo_endo_phos (HMM E-Value=2.7e-05) 28 5.4
SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_11496| Best HMM Match : DUF408 (HMM E-Value=7.3e-07) 27 7.1
SB_25775| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_9346| Best HMM Match : AMMECR1 (HMM E-Value=2.6) 27 9.4
SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 966
Score = 30.3 bits (65), Expect = 1.0
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = -1
Query: 428 CHLPKHNRTSWLHRCQEPYHKYYYILLKTNSLKC*VWLH--LVKVLAGTHDVVYGLSIEP 255
C LP H WL Y+ IL+K + L C +WL+ L L G D +G +
Sbjct: 864 CFLPNHVLFFWLENGSGGSFPYFLILMKYSHL-C-IWLNSFLNPYLYGALDECFGQGYKK 921
Query: 254 IDFECKRSHSFLKILAILLTRR 189
+ C R K+ +T++
Sbjct: 922 VLRSCARFERKTKMTHSRITKQ 943
>SB_41824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 451
Score = 29.5 bits (63), Expect = 1.8
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +2
Query: 221 EKNESAYIQNLSVLYS--NRRRHRACLLKPLPNVTIPNISTNLSLEEYNSICGKVLDICE 394
EK+ +Y Q S N + + C L P V I IS + Y + KV+D+
Sbjct: 372 EKSSGSYKQKSKHDKSEVNGEKKKKCWLHPELRVRI--ISKDYKKGRYYNTKVKVVDVIS 429
Query: 395 ARKSDCASEDG 427
+ DC +EDG
Sbjct: 430 RNECDCETEDG 440
>SB_42283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 306
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -3
Query: 420 SEAQSDFLASQMSRTLPQILLYSSKDKFVEMLGMVTFGKGFSRHARC 280
S AQ D + + + P I L K + E+ FGK S HA C
Sbjct: 53 SRAQQD-INTALENNKPVIALLFDKSNWTEVCNDTDFGKQLSGHATC 98
>SB_39427| Best HMM Match : Ribosomal_L29e (HMM E-Value=3.9)
Length = 306
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -3
Query: 420 SEAQSDFLASQMSRTLPQILLYSSKDKFVEMLGMVTFGKGFSRHARC 280
S AQ D + + + P I L K + E+ FGK S HA C
Sbjct: 53 SRAQQD-INTALENNKPVIALLFDKSNWTEVCNDTDFGKQLSGHATC 98
>SB_51045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 422 LPKHNRTSWLHRCQEPYHKYYYILLKT 342
LP RTSW+H + +H Y++ +T
Sbjct: 227 LPLRKRTSWMHPRSKHWHLIDYVITRT 253
>SB_1555| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 224 KNESAYIQNLSVLYSNRRRHRACLLKPLPNVTIPNISTNLSLEEYNS 364
KN + QNLS+ RR LK PNVT+ NIS+ + + + S
Sbjct: 243 KNRDRFTQNLSIF----RRDVYNSLKT-PNVTVQNISSEIQISGHTS 284
>SB_45951| Best HMM Match : DinI (HMM E-Value=2.2)
Length = 306
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = -1
Query: 422 LPKHNRTSWLHRCQEPYHKYYYILLKTNSLK 330
LP +TSW+H + +H Y++++ ++
Sbjct: 4 LPTRKKTSWMHPRSKHWHLIDYVIVRAKDIR 34
>SB_40943| Best HMM Match : Exo_endo_phos (HMM E-Value=9.2e-07)
Length = 550
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 422 LPKHNRTSWLHRCQEPYHKYYYILLK 345
LP NRTSW+H + +H Y +++
Sbjct: 229 LPTRNRTSWMHPRSKHWHLIDYSIVR 254
>SB_28479| Best HMM Match : Exo_endo_phos (HMM E-Value=0.087)
Length = 466
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = -1
Query: 422 LPKHNRTSWLHRCQEPYHKYYYILLKTNSLK 330
LP +TSW+H + +H Y++++ ++
Sbjct: 164 LPTRKKTSWMHPRSKHWHLIDYVIVRAKDIR 194
>SB_22621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 366 FVVRFLTSVKPGSPIVLRKMAALWSTQN 449
FV+R S PG P+VL + WS+ +
Sbjct: 36 FVLRVSNSCSPGDPLVLERPPPRWSSNS 63
>SB_18159| Best HMM Match : DinI (HMM E-Value=2.2)
Length = 251
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = -1
Query: 422 LPKHNRTSWLHRCQEPYHKYYYILLKTNSLK 330
LP +TSW+H + +H Y++++ ++
Sbjct: 82 LPTRKKTSWMHPRSKHWHLIDYVIVRAKDIR 112
>SB_11944| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012)
Length = 225
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = -1
Query: 422 LPKHNRTSWLHRCQEPYHKYYYILLKTNSLK 330
LP +TSW+H + +H Y++++ ++
Sbjct: 187 LPTRKKTSWMHPRSKHWHLIDYVIVRAKDIR 217
>SB_4662| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = -1
Query: 422 LPKHNRTSWLHRCQEPYHKYYYILLKTNSLK 330
LP +TSW+H + +H Y++++ ++
Sbjct: 82 LPTRKKTSWMHPRSKHWHLIDYVIVRAKDIR 112
>SB_59344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 27.9 bits (59), Expect = 5.4
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +2
Query: 167 CSSLVNIVDELEGW-PVFLEKN--ESAYIQNLSVLYSNRRRHRACLLKPLPNVTIPNIST 337
CS + DEL G+ P FL++ A I + L N H+ PLPN+ I
Sbjct: 37 CSVRNDPPDELRGYKPAFLKRQILRVANISRIDALRPNNNNHKN---SPLPNIN-DIIRR 92
Query: 338 NLSLEEYNSICGKVLDI 388
N +L + C KV +
Sbjct: 93 NYNLLLSSKRCHKVFTV 109
>SB_58157| Best HMM Match : RVT_1 (HMM E-Value=1.6e-36)
Length = 1092
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 422 LPKHNRTSWLHRCQEPYHKYYYILLK 345
LP NRTSW+H + +H Y +++
Sbjct: 235 LPTRNRTSWMHPRSKHWHLIDYSIVR 260
>SB_57293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1395
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 422 LPKHNRTSWLHRCQEPYHKYYYILLK 345
LP NRTSW+H + +H Y +++
Sbjct: 275 LPTRNRTSWMHPRSKHWHLIDYSIVR 300
>SB_54746| Best HMM Match : RVT_1 (HMM E-Value=8.4e-11)
Length = 959
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = -1
Query: 422 LPKHNRTSWLHRCQEPYHKYYYILLKTNSLK 330
LP +TSW+H + +H Y++++ ++
Sbjct: 230 LPTRKKTSWMHPRSKHWHLIDYVIVRAKDIR 260
>SB_49755| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1)
Length = 192
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 422 LPKHNRTSWLHRCQEPYHKYYYILLK 345
LP NRTSW+H + +H Y +++
Sbjct: 154 LPTRNRTSWMHPRSKHWHLIDYSIVR 179
>SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 191 DELEGWPVFLEKNESAYIQNL 253
DE + WPVFL K+ YI+ L
Sbjct: 151 DEQKSWPVFLGKDRYYYIETL 171
>SB_32894| Best HMM Match : DinI (HMM E-Value=2.2)
Length = 211
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = -1
Query: 422 LPKHNRTSWLHRCQEPYHKYYYILLKTNSLK 330
LP +TSW+H + +H Y++++ ++
Sbjct: 4 LPTRKKTSWMHPRSKHWHLIDYVIVRAKDIR 34
>SB_30180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = -1
Query: 422 LPKHNRTSWLHRCQEPYHKYYYILLKTNSLK 330
LP +TSW+H + +H Y++++ ++
Sbjct: 82 LPTRKKTSWMHPRSKHWHLIDYVIVRAKDIR 112
>SB_28837| Best HMM Match : DinI (HMM E-Value=2.2)
Length = 281
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = -1
Query: 422 LPKHNRTSWLHRCQEPYHKYYYILLKTNSLK 330
LP +TSW+H + +H Y++++ ++
Sbjct: 4 LPTRKKTSWMHPRSKHWHLIDYVIVRAKDIR 34
>SB_26985| Best HMM Match : DinI (HMM E-Value=2.2)
Length = 246
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = -1
Query: 422 LPKHNRTSWLHRCQEPYHKYYYILLKTNSLK 330
LP +TSW+H + +H Y++++ ++
Sbjct: 77 LPTRKKTSWMHPRSKHWHLIDYVIVRAKDIR 107
>SB_26941| Best HMM Match : Exo_endo_phos (HMM E-Value=2.7e-05)
Length = 305
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = -1
Query: 422 LPKHNRTSWLHRCQEPYHKYYYILLKTNSLK 330
LP +TSW+H + +H Y++++ ++
Sbjct: 267 LPTRKKTSWMHPRSKHWHLIDYVIVRAKDIR 297
>SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1766
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 422 LPKHNRTSWLHRCQEPYHKYYYILLK 345
LP NRTSW+H + +H Y +++
Sbjct: 229 LPTRNRTSWMHPRSKHWHLIDYSIVR 254
>SB_11496| Best HMM Match : DUF408 (HMM E-Value=7.3e-07)
Length = 825
Score = 27.5 bits (58), Expect = 7.1
Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +2
Query: 80 KRLYFVPVAVISTKENDVVLGNLYFEASGCSSLVNIVDELEG-WPVFLEKNESAYIQNLS 256
K L+F+ A S E D E S S + NIV G WP F E N +A
Sbjct: 426 KALHFITHAENSDSEKDEDTTLPKKENSTTSEVNNIVVYNCGFWPRFYEYNVTAVNAADR 485
Query: 257 VLYSNR 274
VLY NR
Sbjct: 486 VLYQNR 491
>SB_25775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +3
Query: 357 IIVFVVRFLTSVKPGSPIVLRKMAALWSTQN 449
+ V +V + +++PG P+VL + WS+ +
Sbjct: 111 VAVVMVMMMVNMRPGDPLVLERPPPRWSSNS 141
>SB_9346| Best HMM Match : AMMECR1 (HMM E-Value=2.6)
Length = 490
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +2
Query: 308 PNVTIPNISTNLSL-EEYNSICGKVLDICEARKSDCASEDGSTVVNAKLKEQKTIYTLT- 481
P VT+P T L EEY + LD +A S C E+ + ++ + K++ + LT
Sbjct: 347 PPVTLPLNGTGHHLPEEYAVVPPVELDTSKAVVSGCRMEELESCISEEKKKEDQVTHLTR 406
Query: 482 --FEEIEMYSNMYI 517
+E+ ++ +Y+
Sbjct: 407 TRYEDKFVFVKLYL 420
>SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 129 SFSLVEITATGTK*SRLEYFMISCIFSMAPLFQLV 25
+F+LV IT G K + +CIF+MAP++ +V
Sbjct: 165 AFALVPIT--GVKHYPSSLYQGTCIFNMAPIYSVV 197
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,807,888
Number of Sequences: 59808
Number of extensions: 328671
Number of successful extensions: 2337
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 2293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2335
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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