Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302H01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-9|AAA79344.3|  796|Caenorhabditis elegans Hypothetical pr...    30   0.87 
U53338-6|AAA96194.1|  147|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AL132848-4|CAB60387.1|  331|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z66521-16|CAA91396.2|  793|Caenorhabditis elegans Hypothetical p...    28   4.7  
AF188715-1|AAF05590.1|  793|Caenorhabditis elegans alanyl-tRNA s...    28   4.7  
U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U00048-2|AAB53826.1|  262|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>U37429-9|AAA79344.3|  796|Caenorhabditis elegans Hypothetical
           protein F09E5.5 protein.
          Length = 796

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +2

Query: 221 EKNESAYIQNLSVLYSNRRRHRACLLKPLPNVTIPNISTNLSLEEYNSICGKVLDICEAR 400
           E N   +  +L        +    L K +    IP+I  NL+++E+N + GK  D   A 
Sbjct: 422 EDNHGYFYTDLPNTVFGMLKDTVTLAKEVSVEVIPSI-INLTIQEFNELAGKYRDAFTAY 480

Query: 401 KSDCASE 421
           K+D  +E
Sbjct: 481 KTDYFAE 487


>U53338-6|AAA96194.1|  147|Caenorhabditis elegans Hypothetical
           protein C05E11.2 protein.
          Length = 147

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = -2

Query: 160 CFKIQISQHYVVFFGRNNSHRNKIKPFGILYDLLH----FFNGTFIPVGTNLILNL 5
           CF I I    +V+   N ++RN +  + +++ L+H    F  G F  VG +LI  L
Sbjct: 80  CFLILIYSCIIVYLSDNPANRNTVAVYTLIFVLIHCWEQFLYG-FYKVGVSLIRTL 134


>AL132848-4|CAB60387.1|  331|Caenorhabditis elegans Hypothetical
           protein Y47H10A.5 protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 293 GTHDVVYGLSIEPIDFECKRSHSFLKILAILLT 195
           G H V+Y   I+ +D E  R H  LK+L+  LT
Sbjct: 159 GVHSVLYSGQIDAVDNEVNRMHYELKVLSGGLT 191


>Z66521-16|CAA91396.2|  793|Caenorhabditis elegans Hypothetical
           protein W02B12.6a protein.
          Length = 793

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 339 FVEMLGMVTFGKGFSRHARCRLRFEY 262
           F EM+G  +F   FS+   CR  +EY
Sbjct: 108 FFEMMGNWSFNDAFSKEEACRYAWEY 133


>AF188715-1|AAF05590.1|  793|Caenorhabditis elegans alanyl-tRNA
           synthetase protein.
          Length = 793

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 339 FVEMLGMVTFGKGFSRHARCRLRFEY 262
           F EM+G  +F   FS+   CR  +EY
Sbjct: 108 FFEMMGNWSFNDAFSKEEACRYAWEY 133


>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical
           protein R03G5.3 protein.
          Length = 1311

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +2

Query: 212 VFLEKNESAYIQNLSVLYSNR 274
           +F+  NE+ Y Q ++++Y+NR
Sbjct: 450 LFISNNENYYFQTINIIYANR 470


>U00048-2|AAB53826.1|  262|Caenorhabditis elegans Hypothetical
           protein C05D11.5 protein.
          Length = 262

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +2

Query: 149 YFEASGCSSLVNIVDELEGWPVFLEKNESAYIQNLSVLYSNRRRHRA-CLLKPLPNVTIP 325
           Y +A GC   V+++  +      LE     Y +N+       + H+  CL++P+   TIP
Sbjct: 96  YAKALGCCR-VHVMAGIPKSDDDLENAHQTYSENVRFAAEKFKEHKLICLIEPINKYTIP 154

Query: 326 NISTN 340
               N
Sbjct: 155 GYHLN 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,018,087
Number of Sequences: 27780
Number of extensions: 255734
Number of successful extensions: 666
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)