Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302H01f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g18200.1 68417.m02705 purine permease family protein similar ... 31 0.47
At1g11290.1 68414.m01297 pentatricopeptide (PPR) repeat-containi... 29 2.5
At3g05250.1 68416.m00573 zinc finger (C3HC4-type RING finger) fa... 28 3.3
At4g18220.1 68417.m02707 purine permease family protein similar ... 28 4.4
At4g18210.1 68417.m02706 purine permease family protein similar ... 28 4.4
At1g55440.1 68414.m06341 DC1 domain-containing protein contains ... 28 4.4
At3g02880.1 68416.m00282 leucine-rich repeat transmembrane prote... 27 5.8
At5g45510.1 68418.m05590 leucine-rich repeat family protein cont... 27 7.7
At4g29690.1 68417.m04229 type I phosphodiesterase/nucleotide pyr... 27 7.7
At4g16760.1 68417.m02531 acyl-CoA oxidase (ACX1) identical to ac... 27 7.7
At1g53550.1 68414.m06076 F-box family protein similar to F-box f... 27 7.7
>At4g18200.1 68417.m02705 purine permease family protein similar to
purine permease [Arabidopsis thaliana] GI:7620007;
contains Pfam profile PF03151: Domain of unknown
function, DUF250
Length = 1128
Score = 31.1 bits (67), Expect = 0.47
Identities = 17/71 (23%), Positives = 39/71 (54%)
Frame = +2
Query: 8 IENQICTNWNKGAIEKMQEIIKYSKRLYFVPVAVISTKENDVVLGNLYFEASGCSSLVNI 187
I++++ T + A+ + + ++ + +V + V+ + +LG LY+E G S+ V
Sbjct: 411 IDHEVVTESSSSAVPQTENYKRWLRVSIYV-IFVLFCQPLATILGRLYYENGGNSTYVVT 469
Query: 188 VDELEGWPVFL 220
+ +L G+PV +
Sbjct: 470 LLQLIGFPVLV 480
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 83 RLYFVPVAVISTKENDVVLGNLYFEASGCSSLVNIVDELEGWPVFL 220
R+ + VI + VLG LY+E G S+ V + +L G+PV +
Sbjct: 792 RVSIYAIFVIFCQPLATVLGRLYYENGGKSTYVVTLLQLIGFPVLI 837
>At1g11290.1 68414.m01297 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 809
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -2
Query: 175 RTTSACFKIQISQHYVVFFGRNNSHRNKIKPFGILYDLL-HFFNGTFIPVGTNLILNL 5
R T C ++I FF + +H + K + L L+ H ++P TNL+L +
Sbjct: 673 RKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVP-DTNLVLGV 729
>At3g05250.1 68416.m00573 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 278
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 329 ISTNLSLEEYNSICGKVLDICEARKSDCASEDGSTVVNAKLKEQKTIYTLTFEE 490
++ L+LE Y++I + L+ R+ ASE+ V ++ + T Y FEE
Sbjct: 222 LAAGLNLEAYDAIYKQGLEGNNRREIGAASEEREEVEEHNVRTRVTPYLFIFEE 275
>At4g18220.1 68417.m02707 purine permease family protein similar to
purine permease [Arabidopsis thaliana] GI:7620007;
contains Pfam profile PF03151: Domain of unknown
function, DUF250
Length = 344
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 134 VLGNLYFEASGCSSLVNIVDELEGWPVFL 220
+LG LY+E G S + V +L G+P+ L
Sbjct: 17 ILGRLYYENGGNSKWLATVVQLVGFPILL 45
>At4g18210.1 68417.m02706 purine permease family protein similar to
purine permease [Arabidopsis thaliana] GI:7620007,
contains Pfam profile PF03151: Domain of unknown
function, DUF250
Length = 390
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 107 VISTKENDVVLGNLYFEASGCSSLVNIVDELEGWPVFL 220
VIS + +LG +Y++ G S + V +L G+PV L
Sbjct: 54 VISGQTVATILGRVYYDNGGNSKWLATVVQLVGFPVLL 91
>At1g55440.1 68414.m06341 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 653
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = -1
Query: 428 CHLPKHNRTSWLHRCQEPYHKYYYILLKTNSLKC*VWLHLVKVLAGTHDVVYGLSIEPID 249
C L R++ L+ C H T +KC ++++ TH + + LS++P D
Sbjct: 216 CGLSLSTRSTLLYTCLPCSH--------TVHIKCIYLPRVIQITRHTHRLSFTLSLQPGD 267
Query: 248 FEC 240
F C
Sbjct: 268 FSC 270
>At3g02880.1 68416.m00282 leucine-rich repeat transmembrane protein
kinase, putative contains Pfam profiles: PF00069
Eukaryotic protein kinase domain, PF00560 Leucine Rich
Repeat (5 copies)
Length = 627
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +2
Query: 353 EYNSICGKVLDICEARKSDCASEDGSTVVNAKLKEQK 463
E N++CGK LD CEA + G K K
Sbjct: 212 EGNTLCGKPLDTCEAESPNGGDAGGPNTPPEKKDSDK 248
>At5g45510.1 68418.m05590 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 1222
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +2
Query: 194 ELEGWPVFLEKNESAYIQNLS--VLYSNRRRHRACLLKPLPNVTIPNISTNLSLEEYNSI 367
++E P+F + +A + +L+ +L + + R LKPL + I ++S SL E +
Sbjct: 795 QIERLPIFQDSAVAAKLHSLTRLLLRNCSKLRRLPSLKPLSGLQILDLSGTTSLVEMLEV 854
Query: 368 C 370
C
Sbjct: 855 C 855
>At4g29690.1 68417.m04229 type I phosphodiesterase/nucleotide
pyrophosphatase family protein similar to SP|P22413
Ectonucleotide pyrophosphatase/phosphodiesterase 1
(Plasma-cell membrane glycoprotein PC-1) [Includes:
Alkaline phosphodiesterase I (EC 3.1.4.1); Nucleotide
pyrophosphatase (EC 3.6.1.9) {Homo sapiens}; contains
Pfam profile PF01663: Type I phosphodiesterase /
nucleotide pyrophosphatase
Length = 457
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 414 AQSDFLASQMSRTLPQILLYSSKDKFVEMLGMVTFG 307
A +FL + LPQ L YS + ++GMV G
Sbjct: 335 ANGEFLQVYLKENLPQRLHYSDSSRIPPIIGMVGEG 370
>At4g16760.1 68417.m02531 acyl-CoA oxidase (ACX1) identical to
acyl-CoA oxidase [Arabidopsis thaliana] GI:3044214
Length = 675
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 302 PLPNVTIPNISTNLSLEEYNSI 367
PLPN+T+ +I T + YNS+
Sbjct: 216 PLPNITVGDIGTKMGNGAYNSM 237
>At1g53550.1 68414.m06076 F-box family protein similar to F-box
family protein TIGR_Ath1:At3g23960
Length = 408
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +2
Query: 221 EKNESAYIQNLSVLYSNRRRHRA----CLLKPLPNVTIPNISTNLSLE 352
++ + Y NL V SN+R + C P+P + NI + LSLE
Sbjct: 3 KRKQQVYNDNLIVSRSNKRSSTSGKETCYFDPIPVDLVINILSRLSLE 50
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,067,503
Number of Sequences: 28952
Number of extensions: 227988
Number of successful extensions: 746
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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