Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302G12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    27   1.3  
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...    26   3.9  
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...    26   3.9  
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...    26   3.9  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    25   9.0  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    25   9.0  

>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +1

Query: 298 RHYLRSLDAAPNSVAPTVISAASSYVLSGFIGIVLFEEPSS 420
           +H L+++     SV+P V+SA S+ +L+  +     EEP +
Sbjct: 148 QHSLQTIGYICESVSPEVLSAQSNAILTAVVAGARKEEPDA 188


>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 452 IMRIAPAHHWVLDGSSNNTIPIKP 381
           + R+A  HHW+LD  S    P KP
Sbjct: 9   LKRVAAPHHWLLDKLSGTYAP-KP 31


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 452 IMRIAPAHHWVLDGSSNNTIPIKP 381
           + R+A  HHW+LD  S    P KP
Sbjct: 9   LKRVAAPHHWLLDKLSGTYAP-KP 31


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 452 IMRIAPAHHWVLDGSSNNTIPIKP 381
           + R+A  HHW+LD  S    P KP
Sbjct: 9   LKRVAAPHHWLLDKLSGTYAP-KP 31


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/68 (23%), Positives = 26/68 (38%)
 Frame = +1

Query: 289 WSSRHYLRSLDAAPNSVAPTVISAASSYVLSGFIGIVLFEEPSSTQWWAGAILIIMGLTL 468
           W++   + S    P + +  V    SSY +S   G V      S+  W  +    +  T 
Sbjct: 395 WNNSMTMSSNQETPTAASCAVSRIGSSYGMSNNFGSVPLGRTESSPAWGTSGYYDVSSTS 454

Query: 469 IARPKDRD 492
              P DR+
Sbjct: 455 PVAPSDRN 462


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 159 GFPCWNLGICWKRFGEASWN*KCSRRQLCYIRR 257
           GFP W + I     G+ +W+    RRQ+ Y+ R
Sbjct: 45  GFP-WKIVIAGFSIGKYAWDLYLRRRQVPYLLR 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,013,085
Number of Sequences: 5004
Number of extensions: 37334
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)