Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302G12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0189 - 1505073-1505156,1505982-1506152,1506628-1506717           53   2e-07
04_04_1053 - 30431236-30431428,30431794-30431856,30433497-304336...    29   3.0  
04_04_1361 - 32890775-32890837,32891071-32891239,32891285-328914...    28   4.0  

>03_01_0189 - 1505073-1505156,1505982-1506152,1506628-1506717
          Length = 114

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 28/82 (34%), Positives = 48/82 (58%)
 Frame = +1

Query: 262 LIIMVLVNTWSSRHYLRSLDAAPNSVAPTVISAASSYVLSGFIGIVLFEEPSSTQWWAGA 441
           ++I+  V  W    Y+ SL A  +S+  TV + A++++ SG  G  LFEEP  ++W+ GA
Sbjct: 36  MVILFNVTMWGC--YVNSLKAL-SSLQATVTNFAANFISSGLAGYFLFEEPLPSKWFVGA 92

Query: 442 ILIIMGLTLIARPKDRDKFT*D 507
            LII+G+ ++++     K   D
Sbjct: 93  SLIIVGVFILSKSSIEKKLNSD 114


>04_04_1053 -
           30431236-30431428,30431794-30431856,30433497-30433615,
           30433696-30433797,30434588-30434677,30434851-30435141,
           30435218-30435373,30435466-30435699
          Length = 415

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 269 SWSSLTRGVAGITCGHWTLHLTRSHPPSYPQLLATFY 379
           +W+S  +G   + C +W   L R H P + QL   F+
Sbjct: 336 AWASFLQGWGNLACMYWIYSLERYHCP-WQQLTRDFF 371


>04_04_1361 -
           32890775-32890837,32891071-32891239,32891285-32891402,
           32891760-32891861,32891930-32892000,32892315-32892532,
           32892653-32893048,32893822-32893937,32894021-32894087
          Length = 439

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +1

Query: 271 MVLVNTWSSRHYLRSLDAAPNSVAPTVISAASSYVLSGFIGIVLFEE 411
           + L   W    YL +   A  SVA T + +++S + + FIG++L ++
Sbjct: 183 LYLCPIWFVTEYLSNAALARTSVASTTVLSSTSGLFTLFIGVLLGQD 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,112,699
Number of Sequences: 37544
Number of extensions: 250440
Number of successful extensions: 544
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)