Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302G12f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32870| Best HMM Match : DUF6 (HMM E-Value=1.5e-31)                  29   3.1  
SB_34224| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_31099| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_37202| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  

>SB_32870| Best HMM Match : DUF6 (HMM E-Value=1.5e-31)
          Length = 320

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 340 APTVISAASSYVLSGFIGIVLFEEPSSTQWWAGAILIIMGLTLIARPK 483
           A TV+      +L+     +L  EP S    AGA L++ G+ L++R K
Sbjct: 253 ARTVLIGTLGPILTIVFAWMLLSEPVSFAQLAGAALVLAGVLLVSRRK 300


>SB_34224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 233 PTTLSVPASFPKALPADPQ 177
           P T+ VP  FPK  P DP+
Sbjct: 73  PETIPVPEMFPKVTPTDPR 91


>SB_31099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
 Frame = +1

Query: 238 SYAISGVILIIMVLVNTWSSRHYLRSLDAAPN------SVAPTVISAASSYVLSGFIGI 396
           S  I GV   ++ +   W SRH+ R LD   N      +V   +++A+S   ++ ++ I
Sbjct: 189 SILIIGVSYSVLFIKVKWQSRHHKRQLDKKANKREKELAVTLVIVTASSFATVTPYVAI 247


>SB_37202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 239 LSPTTLSVPASFPKALPADPQ 177
           L P T+ VP   PK+ P DP+
Sbjct: 3   LGPETIPVPEMIPKSTPTDPR 23


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,918,112
Number of Sequences: 59808
Number of extensions: 285233
Number of successful extensions: 770
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)