Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302G12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.5  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   5.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 187  QIPKFQQGKPHETFPIFN 134
            ++P F +G PH  F  FN
Sbjct: 1145 KMPSFMEGMPHLPFTPFN 1162


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 358 AASSYVLSGFIGIV--LFEEPSSTQWWAGAILIIMGLTL 468
           A+S  V +G  G    + E+  +  WWA  ++I+  LTL
Sbjct: 163 ASSGVVSAGECGPAADVDEKTDANSWWALILVIVPCLTL 201


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 190 QQIPKFQQGKPHETFPIF 137
           +QIP+F+   P  +FP F
Sbjct: 370 EQIPRFRHIGPSTSFPRF 387


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,060
Number of Sequences: 438
Number of extensions: 2717
Number of successful extensions: 39
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)