Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302G12f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30845.1 68414.m03772 expressed protein                             46   2e-05
At4g32140.1 68417.m04572 expressed protein                             28   4.4  
At4g08300.1 68417.m01371 nodulin MtN21 family protein similar to...    27   7.7  
At4g04970.1 68417.m00722 callose synthase, putative / 1,3-beta-g...    27   7.7  

>At1g30845.1 68414.m03772 expressed protein
          Length = 124

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 24/72 (33%), Positives = 46/72 (63%)
 Frame = +1

Query: 262 LIIMVLVNTWSSRHYLRSLDAAPNSVAPTVISAASSYVLSGFIGIVLFEEPSSTQWWAGA 441
           L+++  V  W+   Y+ SL A  +S+  TV + A++++ SG  G+ LF+E  S +W+AGA
Sbjct: 40  LVVICNVVMWAC--YVNSLRAL-SSLQATVTNFAANFLSSGLAGLFLFQESLSFRWFAGA 96

Query: 442 ILIIMGLTLIAR 477
           + I  G+ ++++
Sbjct: 97  LSITTGVLILSK 108


>At4g32140.1 68417.m04572 expressed protein
          Length = 394

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 271 MVLVNTWSSRHYLRSLDAAPNSVAPTVISAASSYVLSGFIGIVLFEE 411
           + L   W    YL +   A  SVA T + +++S + + FIG+ L ++
Sbjct: 149 LYLAPIWFVTEYLSNAALARTSVASTTVLSSTSGLFTLFIGVFLGQD 195


>At4g08300.1 68417.m01371 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 373

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/82 (20%), Positives = 35/82 (42%)
 Frame = +1

Query: 250 SGVILIIMVLVNTWSSRHYLRSLDAAPNSVAPTVISAASSYVLSGFIGIVLFEEPSSTQW 429
           SG +  +   V      +Y++S+         T   +    +++ F+G+++  E      
Sbjct: 251 SGTLAAVYSGVVCSGMAYYIQSIVIRERGPVFTTSFSPMCMIITAFLGVLVLAEKIHLGS 310

Query: 430 WAGAILIIMGLTLIARPKDRDK 495
             GAI I+ GL  +   K +D+
Sbjct: 311 IIGAIFIVFGLYSVVWGKAKDE 332


>At4g04970.1 68417.m00722 callose synthase, putative /
           1,3-beta-glucan synthase, putative similar to callose
           synthase 1 catalytic subunit GI:13649388 from
           [Arabidopsis thaliana]
          Length = 1768

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/62 (22%), Positives = 24/62 (38%)
 Frame = +1

Query: 244 AISGVILIIMVLVNTWSSRHYLRSLDAAPNSVAPTVISAASSYVLSGFIGIVLFEEPSST 423
           A++  +L  +     WS ++       A N    T +     YV+   + +VLF  P   
Sbjct: 384 AVAWTVLFSVFYARIWSQKNKDGVWSRAANERVVTFLKVVFVYVIPELLALVLFIVPCIR 443

Query: 424 QW 429
            W
Sbjct: 444 NW 445


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,424,138
Number of Sequences: 28952
Number of extensions: 194716
Number of successful extensions: 443
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)