Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302G11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    50   2e-07
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    26   3.9  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    25   6.8  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    25   6.8  
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    25   9.0  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   9.0  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.0  

>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 23/178 (12%)
 Frame = +3

Query: 54  IIDFITAGIETLANSLVFLLYLLSGRPD-----WQRKINSELPPYAMLCSEDLAGAPSVR 218
           +I  + AG  T A ++V++L LL  +P+     W+ +    +     L  +     P + 
Sbjct: 282 MIALLMAGQHTSAATIVWVLALLGSKPEIIEMLWEEQ-KRVVGENLELKFDQYKDMPLLN 340

Query: 219 AAINEAFRLLPTAPFLARLLDSPMTIGGHKI--PPGTFVLAHTAAACRREENFWRAEEYL 392
             I E  RL P      R +   + + G KI  P   ++LA        EE F  A ++ 
Sbjct: 341 YVIQETLRLHPPIHSHMRKVKRDLPVPGSKIVIPANNYLLAAPGLTATEEEYFTHATDFD 400

Query: 393 PERWI-KVQEP-------HAYSLVA--------PFGRGRRMCPGKRFVELELHLLLAK 518
           P+RW  +V E        + Y LV         PFG GR  C G++F  + L  +++K
Sbjct: 401 PKRWNDRVNEDENAEQIDYGYGLVTKGAASPYLPFGAGRHRCIGEQFAYMHLSTIISK 458


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -3

Query: 477 SLDTSCVRVRMEPLASKRAAPAL*SIAPEDIPRRARSFLLYDKPPPYGRAQTFQAGSCVL 298
           SL  S     +E   SKR+ P++ SI  +  PR++ S +      P       +A +C +
Sbjct: 575 SLSRSKTLSILEGSVSKRSEPSMDSILVQATPRKSSSVITELPDTPIKMNSLDKASACTV 634

Query: 297 QSSSV 283
           ++  V
Sbjct: 635 ENHIV 639


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 124 LSRYRRNTKLLASVSIPAVMKSIMAAFLSRMSSAG 20
           LSRY  NT+ L+S+ +P  + + + A  SR+   G
Sbjct: 197 LSRYYGNTEALSSLPLPRNLSADIPAKSSRLFPHG 231


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = -3

Query: 381 RRARSFLLYDKPPPYGRAQTFQAGSC----VLQSSSVNLRALQEME 256
           R  + FL+ +K  P  R +  + G C    + +  S NL AL+E++
Sbjct: 126 REDQEFLIRNKALPEERIRAIETGGCPHAAIREDVSGNLVALEELQ 171


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = +3

Query: 138 WQRKINSELPPYAMLCSEDLAGAPSVRAAINEAFRLLPTAPFL 266
           W  K+N     YA+  +   +G PS+  A       +P  P +
Sbjct: 111 WHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLV 153


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +3

Query: 273 LLDSPMTIGGHKIPPGTFVLAHTAAACRREENFWRAEEYLPERWIKVQ 416
           L+  P+T+    IP G    AH  +    E+  + +E Y P+ ++ ++
Sbjct: 414 LMQQPLTLSPSSIPSGLPTYAHVNSPLGTEQ--YPSEAYPPKGYVDME 459


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +3

Query: 42  KKAAIIDFITAGIETLANSL-VFLLYLLSGRPDWQRK-INSELPPYAMLCSEDLAGAPSV 215
           KK  I  ++  G+E  +  + +F L+L+  R +W++K I   L    M C    + A S 
Sbjct: 91  KKFGIESYLVTGLEHPSTDVEIFCLHLIR-RANWEKKEIGEPLFEAIMACINSRSIAVSE 149

Query: 216 RAAI 227
            A +
Sbjct: 150 EATV 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,267,617
Number of Sequences: 5004
Number of extensions: 46348
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)