Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302G11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...   172   2e-45
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    55   5e-10
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    43   2e-06
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.4  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   1.4  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   7.7  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score =  172 bits (418), Expect = 2e-45
 Identities = 90/175 (51%), Positives = 113/175 (64%), Gaps = 4/175 (2%)
 Frame = +3

Query: 9   ILENPALDMRDKKAAIIDFITAGIETLANSLVFLLYLLSGRPDWQRKINSEL----PPYA 176
           IL    LD+RDKKAAI+DFI AGI TL N+LVFL  L+   P  Q K+  E     P   
Sbjct: 309 ILRQKNLDIRDKKAAIVDFIAAGIHTLGNTLVFLFDLIGRNPTVQNKLYEETYALAPAGC 368

Query: 177 MLCSEDLAGAPSVRAAINEAFRLLPTAPFLARLLDSPMTIGGHKIPPGTFVLAHTAAACR 356
            L  ++L  A  +RA I E+ RL+PT   +AR+LD P+ + G+++  GT VL HT  A  
Sbjct: 369 DLTIDNLRKAKYLRACITESLRLIPTTTCIARILDEPIELSGYRLTAGTVVLLHTWIAGL 428

Query: 357 REENFWRAEEYLPERWIKVQEPHAYSLVAPFGRGRRMCPGKRFVELELHLLLAKI 521
            EENF  A++YLPERW     PH+  LVAPFG GRR+CPGKRFV+L L L+LAKI
Sbjct: 429 NEENFKDAKKYLPERWTTPTTPHSPLLVAPFGAGRRICPGKRFVDLALQLILAKI 483


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 54.8 bits (126), Expect = 5e-10
 Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 9/171 (5%)
 Frame = +3

Query: 36  RDKKAAIIDFITAGIETLANSLVFLLYLLSGRPDWQRKINSELPPY-----AMLCSEDLA 200
           ++ K  +   +  G +T A+   F L ++   PD Q K+  EL             +D  
Sbjct: 336 KEVKEQVDTIMFEGHDTTASGSSFFLAVMGCHPDIQEKVIQELDEIFGDSDRPATFQDTL 395

Query: 201 GAPSVRAAINEAFRLLPTAPFLARLL--DSPMTIGGHKIPPGTFVLAHTAAACRREENFW 374
               +   + E  R+ P  P +AR +  D  +  G + IP G  V+  T    R+   + 
Sbjct: 396 EMKYLERCLLETLRMYPPVPLIAREIKTDLKLASGDYTIPAGCTVVIGTFKLHRQPHIYP 455

Query: 375 RAEEYLPERWI--KVQEPHAYSLVAPFGRGRRMCPGKRFVELELHLLLAKI 521
             + + P+ ++  K    H Y+ V PF  G R C G+++  L+L ++L+ I
Sbjct: 456 NPDVFDPDNFLPEKTANRHYYAFV-PFSAGPRSCVGRKYAMLKLKIVLSTI 505


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 43.2 bits (97), Expect = 2e-06
 Identities = 45/166 (27%), Positives = 66/166 (39%), Gaps = 8/166 (4%)
 Frame = +3

Query: 12  LENPALDMRDKKAAIIDFITAGIETLANSLVFLLYLLSGRPDWQRKINSELPPYAM---- 179
           LEN  L      A    F  AG ET + ++   LY L+   D Q+K+  E+  +      
Sbjct: 284 LENIKLTDSLIAAQAFVFFLAGFETSSTTMSNALYELALNQDVQKKLREEINTFCPKNNK 343

Query: 180 -LCSEDLAGAPSVRAAINEAFRLLPTAPFLARLLDSPMTIGGHKIP-PGTFVLAHTAAAC 353
            L  +D+     +     E  R+ P A  L R   S  T    KI  P    +   A A 
Sbjct: 344 ELKYDDIKEMEYLDKVFKETLRMYPPASILMRKAISDYTFNDTKITIPKEMKIWIPAFAI 403

Query: 354 RREENFW-RAEEYLPERWIKVQEPHAYSL-VAPFGRGRRMCPGKRF 485
            R+   +   + + PER+ +      + +   PFG G R C G RF
Sbjct: 404 HRDSAIYPNPDSFDPERFDQDAMASRHPMHYLPFGDGPRNCIGARF 449


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 511 SNKCSSSSTNRFPGHILRPRPNGATSE*ACG 419
           SN CS+S + R  G  +    N + S   CG
Sbjct: 18  SNTCSNSQSQRSSGSSISRNSNRSESSGYCG 48


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 511 SNKCSSSSTNRFPGHILRPRPNGATSE*ACG 419
           SN CS+S + R  G  +    N + S   CG
Sbjct: 18  SNTCSNSQSQRSSGSSISRNSNRSESSGYCG 48


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 269 CKKWSCRQ*SKGFIDRSSDRRCSC 198
           CKK++    S G   RS  R  SC
Sbjct: 207 CKKYAISSNSLGSRSRSFQRTSSC 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,135
Number of Sequences: 438
Number of extensions: 3094
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)