Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302G10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    30   0.24 
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    28   0.97 
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    28   0.97 
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   2.2  
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    27   2.2  
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...    26   3.0  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.0  
SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr 1|||...    26   3.9  
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    26   3.9  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    25   6.8  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    25   6.8  
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    25   9.0  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   9.0  

>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +3

Query: 291 RSNFLVSKYITPNISNVIMFSTLLNKSFPSCR 386
           ++  L ++  TPN SNV + ++L+N+S PS +
Sbjct: 505 KNTILSNENNTPNYSNVCLSTSLINRSLPSLK 536


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 379 EGKLLFNNVENIITFDI 329
           EGK +FNN++N ITF +
Sbjct: 674 EGKGIFNNIKNFITFQL 690


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 82  VHAFVKRDAPKEDNSINTLAESAKKTIEELREKVESALAPETVKKNFGT 228
           V A +K+D  +E  S   L      TIE+L+ K E+   P    K F +
Sbjct: 128 VQALIKQDFEREHTSPPELPTKLVNTIEKLKVKEENEAPPVIPAKPFSS 176


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = -1

Query: 200 GAKADSTFSLNSSIVFFALSASVFMLLSSLGASRLTNACTLARQIANKIISSLFILD 30
           G  A + F ++ SIV+ A+ ++V   +  + A           ++ NK+ S L++LD
Sbjct: 410 GYMAITKFEVSQSIVYSAIVSAVAEFIRQILAEDQLLLNNFFEELKNKLESDLYLLD 466


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
 Frame = -3

Query: 504 IFN*TVYQIVDPSGFINF------FFTIIDYTLNISRFTIKPRAEFG 382
           +FN  ++  +D +GFINF       +T +  TL+I  F +   + FG
Sbjct: 152 VFNNLLWPSLDKAGFINFQVVEPSMYTSLTTTLSILPFPVNHGSSFG 198


>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 440 IVKKKFINPEGSTIWYTV*LKINKKLI 520
           I  +K  N EGS  W T  ++I+K+LI
Sbjct: 63  ITTRKTPNGEGSKTWETYEMRIHKRLI 89


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 112 KEDNSINTLAESAKKTIEELREKVESAL 195
           KE NSI+ L+ S +KTIE  R  + S +
Sbjct: 371 KEKNSISELSPSLQKTIEWARVNLASTI 398


>SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/75 (21%), Positives = 36/75 (48%)
 Frame = -3

Query: 366 YSITSRTLLHSIYLGLCT*ILKNYFSGFRCFRGLQIFIKFVEAVYHRAKVFLNSLRGQGG 187
           Y +  R +++  YL +   + ++Y  GF  FR ++ ++  +  + H+ ++ +  + G G 
Sbjct: 60  YDLEQRMIIYKDYLCIEK-LEEDYVPGFLSFREIKWYLPLLNHIPHQFRIDIILVDGNGV 118

Query: 186 FNFFPQFLNCFLRTL 142
            +     L C L  L
Sbjct: 119 LHPVGFGLACHLGVL 133


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 216 KLWHDGRQLQRIL*KSEARGSTESL-RSNFLVSKYITPN 329
           K W DGR+  RIL ++E R S  ++ RSN    +Y   N
Sbjct: 216 KKWSDGRR-DRILKQAEERRSNRAVGRSNLSGREYFESN 253


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 170 NSSIVFFALSASVFMLLSSLGASRLTNACTLARQIANKIISSL 42
           N S+  F L A+       +  S  +N C LA+++   ++SSL
Sbjct: 121 NPSLCSFTLPATWSEPPLQISLSTSSNGCRLAQRLLRHVVSSL 163


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +1

Query: 88  AFVKRDAPKEDNSINTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEF 252
           +  K +   EDN     AE  ++T +  ++++   +A ET  K+F   +D F  +
Sbjct: 51  SLAKTEILHEDNPGLLEAEGLERTYKFRQDQLAPNVALETATKSFSLDLDKFGGY 105


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 109 PKEDNSINTLAESAKKTIEELREKVESA 192
           PKED   +T+ E  +K I    EKV+ A
Sbjct: 65  PKEDALYSTIREEYQKAINIQNEKVQLA 92


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 411  FTIKPRAEFGTRENFYSITSRTLLHSIYLGLCT*ILKNYFSG 286
            + +  R+EF   + F+S  +    HS+ L LC+ I   Y+ G
Sbjct: 1035 YQLGQRSEFFNLKRFWSWITNGFYHSLLLFLCS-IAVFYYDG 1075


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,102,042
Number of Sequences: 5004
Number of extensions: 42831
Number of successful extensions: 153
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)