Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302G10f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24250.1 68418.m02853 hypothetical protein                          29   1.9  
At3g28180.1 68416.m03521 glycosyl transferase family 2 protein s...    29   2.5  
At1g73090.1 68414.m08451 expressed protein                             28   3.3  
At5g58720.1 68418.m07356 PRLI-interacting factor, putative simil...    27   5.8  
At3g21510.1 68416.m02714 two-component phosphorelay mediator 3 (...    27   5.8  
At5g15630.1 68418.m01829 phytochelatin synthetase family protein...    27   7.7  
At1g21240.1 68414.m02654 wall-associated kinase, putative simila...    27   7.7  

>At5g24250.1 68418.m02853 hypothetical protein 
          Length = 226

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = -3

Query: 516 NFLFIFN*TVYQIVDPSGFINFFFTIIDYTLN---ISRFTIKPRAEFGTRENFYSITSRT 346
           +FL +F+  V+   +    INFFF+I D+  +   + R  +     F  RE    I +R 
Sbjct: 142 HFLILFSRFVFDFSEE--LINFFFSIFDFRFSRRCLFRSWMMNCIGFDDREMCVEIRNRV 199

Query: 345 LLHSIYLGL 319
           L+  IY+ +
Sbjct: 200 LILEIYVAI 208


>At3g28180.1 68416.m03521 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 673

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +1

Query: 106 APKEDNSINTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNL 264
           A KE+      +ES  + + +L+E+  + +  ETVKK+ G ++   N+   N+
Sbjct: 570 AEKEEKLHRRNSESGLELLSKLKEQETNLVGQETVKKSLGGLMRPKNKKKTNM 622


>At1g73090.1 68414.m08451 expressed protein
          Length = 306

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 192 LGPGDC*EKLWHDGRQLQRI 251
           +GPG C  + W +GR+LQ++
Sbjct: 272 IGPGVCVGQAWQEGRELQQV 291


>At5g58720.1 68418.m07356 PRLI-interacting factor, putative similar
           to PRLI-interacting factor N [Arabidopsis thaliana]
           GI:11139276; contains Pfam profile PF01713: Smr domain
          Length = 519

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +1

Query: 97  KRDAPKEDNSINTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNLKPAE 276
           KR    + +   T ++  KK +EE R+  E     E V KNF   ++S  E + ++   E
Sbjct: 12  KRSCAAKPSGDGTTSDGNKKDVEEERKDGEGKREIENVGKNF---IESLMEAFCSVSMEE 68

Query: 277 APKA 288
           A  A
Sbjct: 69  AMAA 72


>At3g21510.1 68416.m02714 two-component phosphorelay mediator 3
           (HP3) identical to ATHP3 [Arabidopsis thaliana]
           GI:4156245
          Length = 154

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = -1

Query: 239 LSTIVPKFFLTVSGAKADSTFSLNSSIVFFA-LSASVFMLL---SSLGASRLTNACTLAR 72
           +S +V  FF        D + SL+  +V F  +   V  L    SS+GA R+ NAC + R
Sbjct: 42  VSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFR 101

Query: 71  QIANK 57
               +
Sbjct: 102 SFCEQ 106


>At5g15630.1 68418.m01829 phytochelatin synthetase family protein /
           COBRA cell expansion protein COBL4 similar to
           phytochelatin synthetase [Hordeum vulgare subsp.
           vulgare] GI:29570314; identified in Roudier, et al,
           Plant Phys. (2002) 130:538-548 (PMID:12376623); contains
           Pfam profile PF04833: Phytochelatin synthetase-like
           conserved region
          Length = 431

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 513 FLFIFN*TVYQIVDPSGFINFFFTIIDYT 427
           F+ IF  T Y  +DPSG I   + I+ +T
Sbjct: 12  FMIIFTATAYDPLDPSGNITIKWDIMSWT 40


>At1g21240.1 68414.m02654 wall-associated kinase, putative similar
           to wall-associated kinase 1 [Arabidopsis thaliana]
           GI:3549626; expressed in leaves and stems & induced by
           salicylic acid or INA (PMID:10380805)
          Length = 741

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 209 TVSGAKADSTFSLNSSIVFFALSASVFMLLSSLGASRLTNAC 84
           T  G +  S+FSL+S+  F  +  +   LLS+ G    +  C
Sbjct: 105 TALGYQLGSSFSLSSNNKFTLVGCNALSLLSTFGKQNYSTGC 146


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,507,370
Number of Sequences: 28952
Number of extensions: 208513
Number of successful extensions: 644
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)