Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302G08f
         (509 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0PCB7 Cluster: Putative uncharacterized protein; n=3; ...    36   0.71 
UniRef50_Q54GJ1 Cluster: Putative uncharacterized protein; n=1; ...    33   3.8  
UniRef50_Q05FN0 Cluster: Protein recA; n=1; Candidatus Carsonell...    33   5.0  
UniRef50_Q9MTD3 Cluster: DNA-directed RNA polymerase subunit bet...    33   5.0  
UniRef50_Q7XA57 Cluster: Putative BEL1-like protein; n=1; Gnetum...    32   6.6  
UniRef50_Q8I2K6 Cluster: Putative uncharacterized protein PFI150...    32   6.6  
UniRef50_Q7RLS5 Cluster: Putative uncharacterized protein PY0246...    32   6.6  

>UniRef50_Q0PCB7 Cluster: Putative uncharacterized protein; n=3;
           Campylobacter jejuni|Rep: Putative uncharacterized
           protein - Campylobacter jejuni
          Length = 583

 Score = 35.5 bits (78), Expect = 0.71
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
 Frame = -1

Query: 458 ILALIYPNLPITRNNFYQKGLSVEKNLYKIYTAIKCNLNRLKLFQSYKRIKNASYLEAS- 282
           +L+L+YPNL    NNF++  L  E + YK Y  +    +    F  Y  + N   L+A+ 
Sbjct: 463 VLSLLYPNLDYKNNNFHKDHLHPE-SAYKEYEKLYKATDNCISFNIYDSLPNLQMLDANE 521

Query: 281 ----RYLRIKQYINRNTHTN 234
                   +KQ++N   + N
Sbjct: 522 NESKNNKPLKQWVNEKCNGN 541


>UniRef50_Q54GJ1 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 838

 Score = 33.1 bits (72), Expect = 3.8
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = -1

Query: 434 LPITRNNFYQKGLSVEKNLYKIYTAIKCNLNRLKLFQSYK----RIKNASYLEASRYLRI 267
           L I+ NN   + L+ E+++ K Y +I    N  K+ QS++    + K+   +E S  L+I
Sbjct: 684 LNISFNNLLDQSLNSEQSIKKCYQSILSIFNNNKIIQSFELDGNQFKDDQLIEFSNLLKI 743

Query: 266 KQYIN 252
            Q  N
Sbjct: 744 NQNFN 748


>UniRef50_Q05FN0 Cluster: Protein recA; n=1; Candidatus Carsonella
           ruddii PV|Rep: Protein recA - Carsonella ruddii (strain
           PV)
          Length = 296

 Score = 32.7 bits (71), Expect = 5.0
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -1

Query: 461 HILALIYPNLPITRNNFYQKGLSVEKNLYKIYTAIKCNLNRLKLFQSYKRI 309
           ++L ++   + I  +NFY K +S   N  K Y++I+  L R+   +S   I
Sbjct: 157 NVLLILINQVRIKISNFYNKEISTGGNAVKFYSSIRIELKRIGFLKSKNNI 207


>UniRef50_Q9MTD3 Cluster: DNA-directed RNA polymerase subunit beta;
           n=9; Sarcocystidae|Rep: DNA-directed RNA polymerase
           subunit beta - Toxoplasma gondii
          Length = 1051

 Score = 32.7 bits (71), Expect = 5.0
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = -1

Query: 449 LIYPNLPITRNNFYQKGLSVEKNLYKIYTAIKCNLNRLKLFQSYKRIKNASYLEASRYLR 270
           + Y  L +T +NF+   + ++  L +IY +IK       LF  Y  IKN   L+ SRY  
Sbjct: 145 IYYAKLLLTNSNFFN--IILDLKLKQIYLSIKNLKFNFILFLYYLGIKNTDILKYSRYKN 202

Query: 269 IK 264
            K
Sbjct: 203 SK 204


>UniRef50_Q7XA57 Cluster: Putative BEL1-like protein; n=1; Gnetum
           gnemon|Rep: Putative BEL1-like protein - Gnetum gnemon
           (Bago)
          Length = 900

 Score = 32.3 bits (70), Expect = 6.6
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 344 NRLKLFQSYKRIKNASYLEASRYLRIKQYINRN 246
           N L L  SY  I+N  YL +SRY  I  + NR+
Sbjct: 212 NELALLPSYSDIQNGHYLPSSRYYGIGSWANRH 244


>UniRef50_Q8I2K6 Cluster: Putative uncharacterized protein PFI1500w;
           n=2; cellular organisms|Rep: Putative uncharacterized
           protein PFI1500w - Plasmodium falciparum (isolate 3D7)
          Length = 4530

 Score = 32.3 bits (70), Expect = 6.6
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -1

Query: 308 KNASYLEASRYLRIKQYINRNTHTNIV*RF*IIIN*AMYFSSNINSNLFI*YNLFYVL 135
           KN  YL  +R+ +I+ +   N H N+   F I     +Y   N      I YN+F V+
Sbjct: 185 KNMIYLIKNRFKKIESFCKNNLHCNVFENFKICNMLCLYILKNNYKMKCILYNIFSVM 242


>UniRef50_Q7RLS5 Cluster: Putative uncharacterized protein PY02465;
           n=1; Plasmodium yoelii yoelii|Rep: Putative
           uncharacterized protein PY02465 - Plasmodium yoelii
           yoelii
          Length = 624

 Score = 32.3 bits (70), Expect = 6.6
 Identities = 16/62 (25%), Positives = 32/62 (51%)
 Frame = -1

Query: 473 HNCTHILALIYPNLPITRNNFYQKGLSVEKNLYKIYTAIKCNLNRLKLFQSYKRIKNASY 294
           + CT+I+ +I   L    NNF+++      ++  IY  I   + +  + Q+ ++IKN + 
Sbjct: 483 YTCTYIICIIIKTLTPYNNNFFKENTKEYNHILFIYYDISYLIYKNYILQNDEKIKNNNL 542

Query: 293 LE 288
            E
Sbjct: 543 KE 544


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 391,465,058
Number of Sequences: 1657284
Number of extensions: 6363495
Number of successful extensions: 11982
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11968
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30946432294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)