Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302G08f
         (509 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46713| Best HMM Match : GrpE (HMM E-Value=1.7)                      27   6.8  
SB_33903| Best HMM Match : GrpE (HMM E-Value=1.7)                      27   6.8  

>SB_46713| Best HMM Match : GrpE (HMM E-Value=1.7)
          Length = 420

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 362 AIKCNLNRLKLFQSYKRIKNASYLEASRYLRIKQYI 255
           A+     + K + S K  KNAS  E  RY+  +QY+
Sbjct: 335 AVGLKTRKKKSYTSVKSAKNASESEFLRYVAYRQYV 370


>SB_33903| Best HMM Match : GrpE (HMM E-Value=1.7)
          Length = 227

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 362 AIKCNLNRLKLFQSYKRIKNASYLEASRYLRIKQYI 255
           A+     + K + S K  KNAS  E  RY+  +QY+
Sbjct: 142 AVGLKTRKKKSYTSVKSAKNASESEFLRYVAYRQYV 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,868,988
Number of Sequences: 59808
Number of extensions: 188801
Number of successful extensions: 344
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)