Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302G07f
         (373 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57462| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)                 26   8.5  
SB_896| Best HMM Match : No HMM Matches (HMM E-Value=.)                26   8.5  

>SB_57462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 171 CARIGERKSPYVAVCCILMAFSILF 245
           CAR+G   +PYVA    L+A +I+F
Sbjct: 51  CARVGAMGAPYVADSTPLIAPAIIF 75


>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
          Length = 1118

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 117  FPSIMDRNKTGLLGTFWKCARIGERKSPYVAVCCILMAFSI 239
            +P+I+ RN    LGT   C R+G   +PYVA+   L + S+
Sbjct: 1006 YPTIL-RNTA--LGTGSLCGRLGAMIAPYVAMMAQLPSVSL 1043


>SB_896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 968

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 153 LGTFWKCARIGERKSPYVAVCCILMAFSILF 245
           +G    CAR+G   SP++ +   L  FS+ F
Sbjct: 870 MGVGSMCARVGAILSPFIVMLAQLPGFSLTF 900


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,835,354
Number of Sequences: 59808
Number of extensions: 195513
Number of successful extensions: 357
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)