Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302G06f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P85195 Cluster: Lipocalin-2; n=2; Obtectomera|Rep: Lipo...    44   0.002
UniRef50_O52057 Cluster: Sulfur globule protein CV1 precursor; n...    41   0.020
UniRef50_UPI00005A47B7 Cluster: PREDICTED: similar to NK2 transc...    33   3.0  
UniRef50_A5PEK1 Cluster: Putative uncharacterized protein; n=2; ...    33   5.2  
UniRef50_A3A1H2 Cluster: Putative uncharacterized protein; n=1; ...    33   5.2  
UniRef50_Q2I8V7 Cluster: Predicted pecate lyase; n=1; uncultured...    32   6.9  
UniRef50_A2X7W3 Cluster: Putative uncharacterized protein; n=1; ...    32   6.9  
UniRef50_UPI0000DD7ECC Cluster: PREDICTED: similar to Homeobox p...    32   9.2  
UniRef50_Q39PP6 Cluster: Type IV secretory pathway TrbL componen...    32   9.2  
UniRef50_Q01T36 Cluster: 4-amino-4-deoxy-L-arabinose transferase...    32   9.2  
UniRef50_Q9VK03 Cluster: CG15639-PA; n=2; Sophophora|Rep: CG1563...    32   9.2  
UniRef50_A6NCS4 Cluster: Homeobox protein Nkx-2.6; n=14; Amniota...    32   9.2  
UniRef50_P45590 Cluster: Larval/pupal rigid cuticle protein 66 p...    32   9.2  

>UniRef50_P85195 Cluster: Lipocalin-2; n=2; Obtectomera|Rep:
           Lipocalin-2 - Lonomia obliqua (Moth)
          Length = 53

 Score = 44.4 bits (100), Expect = 0.002
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = +3

Query: 150 EGHARAAEAVVQHNTEAVRQAAEASREIHET 242
           + HARA EA VQ+NT+A RQ AEA+R  HE+
Sbjct: 16  QDHARAVEAAVQYNTDATRQVAEANRAAHES 46


>UniRef50_O52057 Cluster: Sulfur globule protein CV1 precursor; n=1;
           Allochromatium vinosum|Rep: Sulfur globule protein CV1
           precursor - Chromatium vinosum (Allochromatium vinosum)
          Length = 127

 Score = 40.7 bits (91), Expect = 0.020
 Identities = 19/28 (67%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 366 APYGIAAPYGIAAPYTAYGA-YGVAPYG 446
           APYG  APYG  APY  YGA YG  PYG
Sbjct: 82  APYGYGAPYGYGAPY-GYGAPYGAMPYG 108



 Score = 37.9 bits (84), Expect = 0.14
 Identities = 20/29 (68%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +3

Query: 366 APYGIAAPYGIAAPYTAYGA-YGV-APYG 446
           APYG  APYG  APY  YGA YG  APYG
Sbjct: 76  APYGYGAPYGYGAPY-GYGAPYGYGAPYG 103



 Score = 35.5 bits (78), Expect = 0.74
 Identities = 19/29 (65%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +3

Query: 372 YGIAAPYGIAAPYTAYGA-YGV-APYGLG 452
           YG  APYG  APY  YGA YG  APYG G
Sbjct: 72  YGYGAPYGYGAPY-GYGAPYGYGAPYGYG 99


>UniRef50_UPI00005A47B7 Cluster: PREDICTED: similar to NK2
           transcription factor related, locus 6; n=1; Canis lupus
           familiaris|Rep: PREDICTED: similar to NK2 transcription
           factor related, locus 6 - Canis familiaris
          Length = 342

 Score = 33.5 bits (73), Expect = 3.0
 Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 387 PYGI-AAPYTAYGAYGVAPYGLG 452
           PYG  AAPY+ YG Y  AP+G G
Sbjct: 274 PYGAPAAPYSCYGGYAGAPFGAG 296


>UniRef50_A5PEK1 Cluster: Putative uncharacterized protein; n=2;
           Erythrobacter|Rep: Putative uncharacterized protein -
           Erythrobacter sp. SD-21
          Length = 230

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = -1

Query: 482 AVVIGLPS-VDAEAVGGDAVSAISGVGRGDSVRCGDA-IGGSDQG 354
           AV++G P+   AEA+GG  V  I GV R  SV  GDA +G S+ G
Sbjct: 75  AVLVGCPNEASAEALGGTIVDTIDGV-RLVSVPMGDANVGMSENG 118


>UniRef50_A3A1H2 Cluster: Putative uncharacterized protein; n=1;
           Oryza sativa (japonica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. japonica
           (Rice)
          Length = 392

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 488 RLAVVIGLPSVDAEAVGGDAV-SAISGVGRGDSVRCGDA 375
           RL V +G   VD  AVGGD +   + GV R +++  GDA
Sbjct: 138 RLNVAVGGGGVDGAAVGGDGIDGVVVGVDRLEALEVGDA 176


>UniRef50_Q2I8V7 Cluster: Predicted pecate lyase; n=1; uncultured
           bacterium|Rep: Predicted pecate lyase - uncultured
           bacterium
          Length = 386

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
 Frame = -1

Query: 449 EAVGGDAVSAISGVGRGDSVRCGDAIGGSDQ-----GRGEV 342
           E +G DA +A+   G   S+ CG A+ GSD+     GRGE+
Sbjct: 223 EDIGEDAATAMGPAGTIMSITCGSALNGSDKTFQFNGRGEL 263


>UniRef50_A2X7W3 Cluster: Putative uncharacterized protein; n=1;
           Oryza sativa (indica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. indica
           (Rice)
          Length = 242

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 21/48 (43%), Positives = 23/48 (47%)
 Frame = -1

Query: 482 AVVIGLPSVDAEAVGGDAVSAISGVGRGDSVRCGDAIGGSDQGRGEVG 339
           A V+GL      AV G  V A+ GVG G S   G A GG   G G  G
Sbjct: 43  AGVLGLIGETVGAVVGATVGAVDGVGAGASAGGGVAGGGGVAGGGARG 90


>UniRef50_UPI0000DD7ECC Cluster: PREDICTED: similar to Homeobox
           protein Nkx-2.6 (Homeobox protein NK-2 homolog F); n=2;
           Theria|Rep: PREDICTED: similar to Homeobox protein
           Nkx-2.6 (Homeobox protein NK-2 homolog F) - Homo sapiens
          Length = 227

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 384 APYGIA-APYTAYGAYGVAPYGLG 452
           +PY  A +PY+ YG Y  APYG G
Sbjct: 158 SPYSAAVSPYSCYGGYSGAPYGAG 181


>UniRef50_Q39PP6 Cluster: Type IV secretory pathway TrbL
           components-like; n=1; Geobacter metallireducens
           GS-15|Rep: Type IV secretory pathway TrbL
           components-like - Geobacter metallireducens (strain
           GS-15 / ATCC 53774 / DSM 7210)
          Length = 483

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -1

Query: 482 AVVIGLPSVDAEAVGGDAVSAISGVGRGDSVRCGDAIGGSDQGRGEVGS 336
           AV+ G PS+ A A  G A+SA +G         G A GG+    G  G+
Sbjct: 260 AVLSGSPSLSAGAAAGTALSAAAGAAAPAMAAAGMATGGAAVAGGLAGA 308


>UniRef50_Q01T36 Cluster: 4-amino-4-deoxy-L-arabinose transferase
           and related glycosyltransferases of PMT family-like
           protein precursor; n=1; Solibacter usitatus
           Ellin6076|Rep: 4-amino-4-deoxy-L-arabinose transferase
           and related glycosyltransferases of PMT family-like
           protein precursor - Solibacter usitatus (strain
           Ellin6076)
          Length = 882

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +3

Query: 369 PYGIAAPYGIAAPYTAYGAYGVAPYGLGVHAW*TDHDREPL 491
           P GI A +  AA YTA  A G+ PY LG+  W     R+P+
Sbjct: 253 PIGILAGFSFAAKYTA--AIGI-PYALGIVIWTRWRTRKPV 290


>UniRef50_Q9VK03 Cluster: CG15639-PA; n=2; Sophophora|Rep:
           CG15639-PA - Drosophila melanogaster (Fruit fly)
          Length = 529

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = -1

Query: 449 EAVGGDAVSAISGVGRGDSVRCGDAIGGSDQGRGEVGS 336
           E +  D+ S + G G G S   G A GGS  G G VGS
Sbjct: 352 EGLNDDSGSRMGGGGAGGSAGGGGAAGGSVAGAGAVGS 389


>UniRef50_A6NCS4 Cluster: Homeobox protein Nkx-2.6; n=14;
           Amniota|Rep: Homeobox protein Nkx-2.6 - Homo sapiens
           (Human)
          Length = 301

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 384 APYGIA-APYTAYGAYGVAPYGLG 452
           +PY  A +PY+ YG Y  APYG G
Sbjct: 232 SPYSAAVSPYSCYGGYSGAPYGAG 255


>UniRef50_P45590 Cluster: Larval/pupal rigid cuticle protein 66
           precursor; n=1; Hyalophora cecropia|Rep: Larval/pupal
           rigid cuticle protein 66 precursor - Hyalophora cecropia
           (Cecropia moth)
          Length = 129

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 354 PLVTAPYGIAAPYGIAAPY 410
           P +TAPYG A PY   +PY
Sbjct: 87  PYITAPYGYAVPYAYTSPY 105


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,873,271
Number of Sequences: 1657284
Number of extensions: 3031246
Number of successful extensions: 15227
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15153
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)