Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302G05f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||... 26 3.0
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|... 26 3.0
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo... 26 3.9
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom... 25 5.2
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 25 6.8
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 25 6.8
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces... 25 9.0
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 9.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 9.0
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 9.0
>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 356
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -3
Query: 369 YHHNKANFYSSSICKGMPSQ-LYPQ 298
Y H A YSS+ C G+PS L PQ
Sbjct: 306 YSHRTAEGYSSNSCLGIPSYFLNPQ 330
>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -3
Query: 369 YHHNKANFYSSSICKGMPSQ-LYPQ 298
Y H A YSS+ C G+PS L PQ
Sbjct: 306 YSHRTAEGYSSNSCLGIPSYFLNPQ 330
>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 413
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 24 CFAKSLKMYVVSNLVKVTIPNYLSSLP 104
C KSL++Y +SN ++ PN +S+LP
Sbjct: 8 CEEKSLQLYPLSNKIRHVNPN-ISALP 33
>SPAC6F12.13c |fps1||geranyltranstransferase
Fps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 78 IPNYLSSLPIPDSVGGWFR 134
I NYL ++ IPD V W++
Sbjct: 21 IVNYLKTINIPDDVTEWYK 39
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Frame = +3
Query: 12 EALVCFAKSLKMYVVSNLVKVTIPN----YLSSLPI 107
+ L+C SLK+ VS L+ V P Y+S P+
Sbjct: 367 DLLICIGTSLKVAPVSELISVIPPTTPQIYISRTPV 402
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/52 (19%), Positives = 26/52 (50%)
Frame = +3
Query: 45 MYVVSNLVKVTIPNYLSSLPIPDSVGGWFRLGVKDWLALIPPTVVVGGISYY 200
M+ +V VT+ + + + + + + + W+ ++PP++V SY+
Sbjct: 807 MFPKGGVVSVTLSALIKTPRLLELISPFLEIKKDSWILILPPSIVDMVKSYF 858
>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 24.6 bits (51), Expect = 9.0
Identities = 20/76 (26%), Positives = 30/76 (39%)
Frame = -1
Query: 311 SYILNVNKVHNFINVLPDTRVYLTTASFSGFFYCLVRVVRYTANYNCRRNQC*PIFNSKT 132
S+ L + +F+N+ YLT + F L +V + Y CR+N I S T
Sbjct: 162 SFALYKYTIPSFLNIQEWADEYLTGKNPERFRIFLWKVDKLLTAYICRKNALLQINKSLT 221
Query: 131 KPSANRIWNRQARQIV 84
N N +V
Sbjct: 222 IDGTNISANLSCTHLV 237
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 246 FDHCQLLWLFLLSGKSSKIYRQLQ 175
FD C+ LW +SGK + ++Q
Sbjct: 555 FDGCEALWTVSISGKLRNMKSRIQ 578
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 190 IPPTTTVGGISANQSLTPRRNHPPT 116
IPP V I ++ + P ++HPP+
Sbjct: 969 IPPPLPVSNILSSPTSEPPKDHPPS 993
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 24.6 bits (51), Expect = 9.0
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +3
Query: 105 IPDSVGGWFRLGVKDWL 155
+P+S+ FR G+K W+
Sbjct: 1084 VPESINSLFRAGIKFWM 1100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,073,930
Number of Sequences: 5004
Number of extensions: 42509
Number of successful extensions: 109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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