Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302G05f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)                     30   1.3  
SB_47437| Best HMM Match : GlcNAc_2-epim (HMM E-Value=2.1)             30   1.3  
SB_52651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_53453| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 636

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 152 VSTDSAYSCSWRYILLLLPDNKKSQRSWQWSNKPLYQEGH**SCG 286
           +S   A SC +RY   ++  +     SW W  +  Y  GH   CG
Sbjct: 336 ISVRLALSCGYRYGTRIISGSDAQPNSWPWMVQINYNNGH--HCG 378


>SB_47437| Best HMM Match : GlcNAc_2-epim (HMM E-Value=2.1)
          Length = 786

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 420 QRLGRCCRQFLYYEDRDYHHNKANFYSSSICKGMPS 313
           ++    CR  L Y  RD  H    FYS+     +PS
Sbjct: 311 EKFAETCRDILLYVMRDLSHKLGGFYSAEDADSLPS 346


>SB_52651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 59

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 318 ASLCRCWRSKNWPYCDGSH 374
           A LC C ++   PYCDG+H
Sbjct: 26  AFLCGCKQTGTPPYCDGTH 44


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = -2

Query: 187  PPTTTVGGISANQSLTPRR---NHPPTESGIGKLDR*LGMVTLTKLETTYIFKLLAK 26
            PPT T   IS+ Q++ P+R   NHP T    G+    + +  ++  ++ Y+  L  K
Sbjct: 1474 PPTFTTSLISSMQTIEPKRSQNNHPETSHEKGENTSSVTLSAISFPDSVYLKSLPEK 1530


>SB_53453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = -2

Query: 190 IPPTTTVGGISANQSLTPR----RNHPPTESGIGKLDR 89
           I   TT    +AN SL+P     R+HP T SGIG   R
Sbjct: 42  IQSPTTKQQATANSSLSPLCALLRDHPGTRSGIGDSHR 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,343,198
Number of Sequences: 59808
Number of extensions: 318312
Number of successful extensions: 832
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)