Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302G05f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51720.1 68418.m06414 expressed protein                             81   4e-16
At5g27890.1 68418.m03347 expressed protein                             31   0.62 
At5g20840.1 68418.m02475 phosphoinositide phosphatase family pro...    30   1.1  
At1g60800.1 68414.m06844 leucine-rich repeat family protein / pr...    29   1.9  
At4g16310.1 68417.m02473 amine oxidase family protein / SWIRM do...    28   3.3  

>At5g51720.1 68418.m06414 expressed protein
          Length = 108

 Score = 81.0 bits (191), Expect = 4e-16
 Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
 Frame = +3

Query: 162 IPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKAS-LCRCW 338
           +P   V GG      Q +   R  G G INP IRK+ +KVVD + + ++++  +  CRCW
Sbjct: 18  LPFKPVTGGEVGRKQQRMVVVRAEGGGGINPEIRKNEDKVVDSVVVTELSKNITPYCRCW 77

Query: 339 RSKNWPYCDGSHGPHNKETGDNTGPVVVR 425
           RS  +P CDGSH  HNK  GDN GP++++
Sbjct: 78  RSGTFPLCDGSHVKHNKANGDNVGPLLLK 106


>At5g27890.1 68418.m03347 expressed protein
          Length = 399

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 193 DIPPTTTVGGISANQSLTPRRNHPPTESGIGKLDR 89
           D  P    GGISA+ +    R+H P+ S +GK  R
Sbjct: 154 DFRPRGAFGGISASLAAVRTRDHSPSSSEMGKASR 188


>At5g20840.1 68418.m02475 phosphoinositide phosphatase family
           protein contains similarity to phosphoinositide
           phosphatase SAC1 [Rattus norvegicus]
           gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
           SacI homology domain; identical to cDNA SAC domain
           protein 4 (SAC4)  GI:31415724
          Length = 831

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = +3

Query: 192 SYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASLC 329
           S + +  ++K +  GS  I    ++D++ V +F+DIE ++   +LC
Sbjct: 706 STHFFGDVQKVQHNGSSSIYLSEQEDMSSVSNFVDIEWLSSSENLC 751


>At1g60800.1 68414.m06844 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 632

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +3

Query: 213 IKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWP 356
           +KK  +   G++   I KD+N   D +++E+I + A LC  +   + P
Sbjct: 520 VKKLHQ--EGKLKQLIDKDLNDKFDRVELEEIVQVALLCTQFNPSHRP 565


>At4g16310.1 68417.m02473 amine oxidase family protein / SWIRM
            domain-containing protein low similarity to polyamine
            oxidase isoform-1 [Homo sapiens] GI:14860862; contains
            Pfam profiles PF01593: amine oxidase flavin-containing,
            PF04433: SWIRM domain
          Length = 1265

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 20/76 (26%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
 Frame = +3

Query: 108  PDSVGGWFRLGVKDWLALIPPTVVVGGISYYS-YQTIKKAREAGSGQINPCIRKDINKVV 284
            PD+VGG    GV++ + +I   ++  G  Y +  +T++KA+   S  +   +R D+ K +
Sbjct: 1066 PDTVGGAMMTGVREAVRII--DILRSGNDYTAEIETLEKAQRK-SVPVRDEVR-DLIKRL 1121

Query: 285  DFIDIEDITEKASLCR 332
            + +++ ++  + SL R
Sbjct: 1122 EVVELSNVLARQSLLR 1137


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,803,992
Number of Sequences: 28952
Number of extensions: 225853
Number of successful extensions: 611
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)