Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302G04f
(483 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 27 1.5
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 26 2.6
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces... 26 2.6
SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces p... 26 3.4
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.4
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc... 25 4.5
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 25 4.5
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ... 25 6.0
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 7.9
SPAC959.10 |sen15||tRNA-splicing endonuclease subunit Sen15|Schi... 25 7.9
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 1.5
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 107 QWGTDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIK 229
QWGTD ++ ++ TR+ +Q++ F + E + ++K
Sbjct: 382 QWGTDFALIANMFPTRNRRQIKLKFKQEERRNPARVNQALK 422
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 2.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 373 EPLRDRPRGHQAGIPRGGARYPIRPYS 453
+PL+ R R H+ G PR YP P S
Sbjct: 10 KPLKKRSRAHRLGDPRFYCTYPDCPKS 36
>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 2.6
Identities = 15/66 (22%), Positives = 28/66 (42%)
Frame = +3
Query: 30 IAMKTRASMKAQLKPMLKHWPPLVKVNGEPTNQSSTPSLSLAPISS*DRSSPSTKL*PEK 209
+ K+ + Q +H+ +V+ N +QSS + + + +P K P
Sbjct: 244 VVFKSLIKSREQKVKQFEHFQQIVQSNSNNPDQSSRSDPNFVEATPVVQQTPELKPSPNT 303
Query: 210 TLRTRS 227
T+RT S
Sbjct: 304 TIRTSS 309
>SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 111
Score = 25.8 bits (54), Expect = 3.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -3
Query: 421 LEECLLDVP*VDLGAAHHDADERLVVGADALHRVVQALSEET 296
LEE L+ L A+ +D D+ + ++ V+ AL++ET
Sbjct: 10 LEEICLEAAQPVLKASEYDGDKTAEMNQSVIYAVLNALNKET 51
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 3.4
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = -1
Query: 411 ACLMSPRSISERLTTMRMSVLSLVPMPFIE*YRRSAKKPTLLFTHLAIASMPF 253
A L R+I + T++ ++V L+P+P + + AK + +H+ +PF
Sbjct: 102 AILKEKRNILQDKTSVNVNVNKLIPIPKKKVLKNRAKSLLSIKSHVHFHLIPF 154
>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 25.4 bits (53), Expect = 4.5
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 474 PXNVIRLTIGANWVPGPPSRNACLMSPRSISERLTTMRMSVLSLVPMP 331
P ++ L GAN V GP + L+S + ER+ R++ + V P
Sbjct: 22 PMRLLALRYGANLVWGPEIVDKALLSGTPV-ERVVNDRINCIDFVKPP 68
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 25.4 bits (53), Expect = 4.5
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +2
Query: 152 RSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSIEKGMLAIAKCVKSKVGFFAERLYYSMK 331
+SY QLR+ E D D I + + + G +A+ C+ S F LY +MK
Sbjct: 249 QSYVQLRKPLLENNLPYEIDGFDKILQCANSEADIGWIAMIHCIGSNGYAFPIHLYLNMK 308
>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 524
Score = 25.0 bits (52), Expect = 6.0
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +2
Query: 152 RSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSI 250
+ Y + ++ +YE G I+D I+ F G +
Sbjct: 5 KPYTEALEVLKKYEKKDGLSIDDLIRHNFQGGL 37
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 24.6 bits (51), Expect = 7.9
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 90 PPLVKVNGEPTNQSSTPSLSLAPISS*DRSSP 185
P K G P+N PSL P S +S+P
Sbjct: 316 PSSPKTEGAPSNAQFRPSLPATPNGSVPQSNP 347
>SPAC959.10 |sen15||tRNA-splicing endonuclease subunit
Sen15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 143
Score = 24.6 bits (51), Expect = 7.9
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 139 HPYHSLLSAAETDLR 183
+PY+ +L A ETDLR
Sbjct: 18 NPYYGILRAVETDLR 32
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,818,797
Number of Sequences: 5004
Number of extensions: 34832
Number of successful extensions: 104
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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