Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302G04f
(483 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0008 + 13651997-13652072,13652440-13652541,13653138-136531... 84 5e-17
08_02_0726 + 20452492-20453238,20453676-20453765,20453904-20454107 66 1e-11
07_03_1563 - 27746977-27747180,27747280-27747369,27747529-277477... 62 2e-10
09_04_0360 - 16944990-16945202,16945288-16945377,16945525-169457... 60 7e-10
02_05_0782 - 31716860-31717150,31717400-31717612,31718497-317186... 53 1e-07
06_01_0830 + 6261629-6261704,6261829-6261974,6262086-6262310,626... 52 3e-07
05_04_0139 + 18355597-18355696,18356665-18356778,18357118-183572... 49 2e-06
01_05_0009 - 17101633-17101836,17101948-17102040,17102122-171023... 42 2e-04
10_01_0076 - 987092-987671,987747-987812,988201-988363,988467-98... 34 0.069
01_06_1171 - 35089719-35090336,35090596-35090715,35090851-350911... 30 1.1
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 28 3.4
02_05_0889 - 32532495-32533832,32533919-32534151,32534321-325344... 28 4.5
07_01_0288 - 2097361-2097855 27 6.0
01_04_0076 + 15780981-15780996,15781277-15783109,15783186-157833... 27 7.9
>09_04_0008 +
13651997-13652072,13652440-13652541,13653138-13653142,
13653970-13654188,13654686-13654901,13654989-13655078,
13656307-13656507
Length = 302
Score = 84.2 bits (199), Expect = 5e-17
Identities = 40/101 (39%), Positives = 62/101 (61%)
Frame = +2
Query: 113 GTDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSIEKGMLAIAKCVKSK 292
GTDE F I RS+ + + + Y + + +E +K E SG+ E +L I +C ++
Sbjct: 171 GTDEKTFIRIFTERSWAHMASVASAYHHMYDRSLEKVVKSETSGNFELALLTILRCAENP 230
Query: 293 VGFFAERLYYSMKGIGTNDKTLIRIVVSRSEIDLGDIKQAF 415
+FA+ L SMKG+GT+D TLIR+VV+R+EID+ IK +
Sbjct: 231 AKYFAKVLRKSMKGMGTDDSTLIRVVVTRTEIDMQYIKAEY 271
Score = 33.1 bits (72), Expect = 0.12
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Frame = +2
Query: 140 ILITRSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSIEKGMLAIAKCVKSK--------V 295
I+ +R+ QL+ + Y A G +E I + SG +K +LA + + V
Sbjct: 96 IICSRTPSQLQIMKQTYHAKFGTYLEHDIGQRTSGDHQKLLLAYVGIPRYEGPEVDPTIV 155
Query: 296 GFFAERLYYS-MKGIGTNDKTLIRIVVSRSEIDLGDIKQAF 415
A+ LY + K +GT++KT IRI RS + + A+
Sbjct: 156 THDAKDLYKAGEKRLGTDEKTFIRIFTERSWAHMASVASAY 196
Score = 32.7 bits (71), Expect = 0.16
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +2
Query: 113 GTDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSIEKGMLAI 271
GTD+S +++TR+ ++ I AEY K + ++I E SG+ +L++
Sbjct: 246 GTDDSTLIRVVVTRTEIDMQYIKAEYYKKYKKSLAEAIHSETSGNYRTFLLSL 298
>08_02_0726 + 20452492-20453238,20453676-20453765,20453904-20454107
Length = 346
Score = 66.5 bits (155), Expect = 1e-11
Identities = 29/65 (44%), Positives = 46/65 (70%)
Frame = +2
Query: 221 SIKKEFSGSIEKGMLAIAKCVKSKVGFFAERLYYSMKGIGTNDKTLIRIVVSRSEIDLGD 400
++K E SG+ G+L I +C +S +FA+ L+ +MKG+GTND TLIR+V +R+E+D+
Sbjct: 250 AVKSETSGNFGFGLLTILRCAESPAKYFAKVLHEAMKGLGTNDTTLIRVVTTRAEVDMQY 309
Query: 401 IKQAF 415
IK +
Sbjct: 310 IKAEY 314
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/53 (24%), Positives = 29/53 (54%)
Frame = +2
Query: 113 GTDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSIEKGMLAI 271
GT+++ ++ TR+ ++ I AEY + + D++ E SG+ +L++
Sbjct: 289 GTNDTTLIRVVTTRAEVDMQYIKAEYHRSYKRSLADAVHSETSGNYRTFLLSL 341
>07_03_1563 -
27746977-27747180,27747280-27747369,27747529-27747753,
27748002-27748115,27748218-27748423,27748757-27748832
Length = 304
Score = 62.1 bits (144), Expect = 2e-10
Identities = 35/101 (34%), Positives = 53/101 (52%)
Frame = +2
Query: 113 GTDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSIEKGMLAIAKCVKSK 292
G DE + I+ TRS QLR F Y G DI + I G + + C+ S
Sbjct: 174 GEDEVV--RIVTTRSKSQLRATFQRYREDHGSDIAEDIDSHCIGQFGRMLKTAVWCLTSP 231
Query: 293 VGFFAERLYYSMKGIGTNDKTLIRIVVSRSEIDLGDIKQAF 415
FAE + +S+ G+GT + L R++VSR+EID+ I++ +
Sbjct: 232 EKHFAEVIRHSILGLGTYEDMLTRVIVSRAEIDMRHIREEY 272
>09_04_0360 -
16944990-16945202,16945288-16945377,16945525-16945746,
16945854-16946081,16946163-16946372
Length = 320
Score = 60.5 bits (140), Expect = 7e-10
Identities = 27/99 (27%), Positives = 52/99 (52%)
Frame = +2
Query: 119 DESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSIEKGMLAIAKCVKSKVG 298
DE++ + RS QLR F Y+ + G D ++KK G E+ + + KC+ +
Sbjct: 187 DEAVILEMFSKRSIPQLRLAFCSYKHIYGHDYTKALKKNGFGEFEQSLRVVVKCIYNPSM 246
Query: 299 FFAERLYYSMKGIGTNDKTLIRIVVSRSEIDLGDIKQAF 415
+F++ L+ S++ TN + + R ++ ++D+ IK F
Sbjct: 247 YFSKLLHRSLQCSATNKRLVTRAILGSDDVDMDKIKSVF 285
>02_05_0782 -
31716860-31717150,31717400-31717612,31718497-31718642,
31718742-31718817
Length = 241
Score = 53.2 bits (122), Expect = 1e-07
Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Frame = +2
Query: 116 TDESIFNSILITRSYQQLRQIFAEYEALTG----KDIEDSIKKEFSGSIEKGMLAIAKCV 283
+D+ I IL TRS QL F Y G KD++ K EF G++ AI +C
Sbjct: 112 SDDEIIR-ILTTRSKAQLLATFNSYNDQFGHPITKDLKADPKDEFLGTLR----AIIRCF 166
Query: 284 KSKVGFFAERLYYSMKGIGTNDKTLIRIVVSRSEIDLGDIKQAF 415
+F + + ++ G+GT++ +L RI+ +R+E+DL IK+A+
Sbjct: 167 TCPDRYFEKVIRLALGGMGTDENSLTRIITTRAEVDLKLIKEAY 210
Score = 31.9 bits (69), Expect = 0.28
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 110 WGTDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSIE 253
WGT+E + SIL R Q R I Y G+++ ++ E G E
Sbjct: 27 WGTNEKLIISILAHRDAAQRRAIRRAYAEAYGEELLRALNDEIHGKFE 74
>06_01_0830 +
6261629-6261704,6261829-6261974,6262086-6262310,
6262910-6263122,6264007-6264300
Length = 317
Score = 51.6 bits (118), Expect = 3e-07
Identities = 32/102 (31%), Positives = 52/102 (50%)
Frame = +2
Query: 110 WGTDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSIEKGMLAIAKCVKS 289
+G DE I IL TRS QL F Y G I +K + + AI +C
Sbjct: 186 YGDDEII--RILTTRSKAQLIATFNRYNDEYGHPINKDLKADPKDEFLSTLRAIIRCFCC 243
Query: 290 KVGFFAERLYYSMKGIGTNDKTLIRIVVSRSEIDLGDIKQAF 415
+F + + ++ G+GT++ +L RI+ +R+E+DL I +A+
Sbjct: 244 PDRYFEKVIRLAIAGMGTDENSLTRIITTRAEVDLKLITEAY 285
Score = 42.3 bits (95), Expect = 2e-04
Identities = 28/104 (26%), Positives = 46/104 (44%)
Frame = +2
Query: 110 WGTDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSIEKGMLAIAKCVKS 289
WGT+E++ SIL R Q R I Y G+++ SI E SG E+ ++
Sbjct: 27 WGTNEALIISILAHRDAAQRRAIRRAYADTYGEELLRSITDEISGDFERAVILWTLDPAE 86
Query: 290 KVGFFAERLYYSMKGIGTNDKTLIRIVVSRSEIDLGDIKQAFLE 421
+ A + G+ + L+ I +R L ++QA+ E
Sbjct: 87 RDAVLANEVARKWYP-GSGSRVLVEIACARGPAQLFAVRQAYHE 129
>05_04_0139 +
18355597-18355696,18356665-18356778,18357118-18357263,
18357365-18357910,18358397-18358600
Length = 369
Score = 49.2 bits (112), Expect = 2e-06
Identities = 28/92 (30%), Positives = 48/92 (52%)
Frame = +2
Query: 140 ILITRSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSIEKGMLAIAKCVKSKVGFFAERLY 319
I+ TRS QL Y GK I++ + + + A C+ S FAE +
Sbjct: 246 IVGTRSKAQLAVTLERYRQEHGKGIDEVLDGRRGDQLAAVLKAALWCLTSPEKHFAEVIR 305
Query: 320 YSMKGIGTNDKTLIRIVVSRSEIDLGDIKQAF 415
S+ G+GT+++ L R +VSR+E+D+ +K+ +
Sbjct: 306 TSILGLGTDEEMLTRGIVSRAEVDMEKVKEEY 337
Score = 35.1 bits (77), Expect = 0.030
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 110 WGTDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSIEKGML 265
WGTDE+ IL R+ Q +I YE L + + D + E SG ++
Sbjct: 73 WGTDENALIEILGHRTAAQRAEIAVAYEGLYDETLLDRLHSELSGDFRSALM 124
>01_05_0009 -
17101633-17101836,17101948-17102040,17102122-17102334,
17102514-17102651,17102764-17102909,17106264-17106339
Length = 289
Score = 42.3 bits (95), Expect = 2e-04
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +2
Query: 116 TDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSIEKGMLAIA-KCVKSK 292
TD I+ TRS QL F+ + G I +++ + L A +C+
Sbjct: 157 TDHGELIRIVGTRSRAQLNATFSWFRDERGTSITKALQHGADPTGYSHALRTALRCISDA 216
Query: 293 VGFFAERLYYSMKGIGTNDKTLIRIVVSRSEIDLGDIKQAF 415
+F + L +M GTN+ +L R++V +E DL IK AF
Sbjct: 217 NKYFVKVLRNAMHKSGTNEDSLTRVIVLHAEKDLKGIKDAF 257
Score = 36.7 bits (81), Expect = 0.010
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 110 WGTDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSIEKGM 262
WGTDE +L R Q +QI YE +++ ++ E SG +E+ M
Sbjct: 27 WGTDEQAVIGVLAHRDATQRKQIRLTYEENYNENLIQRLQSELSGDLERAM 77
>10_01_0076 -
987092-987671,987747-987812,988201-988363,988467-988548,
989153-989202,989237-989270,990177-990239,990339-990403,
990485-990560,991274-991353,991514-991628,991729-991830
Length = 491
Score = 33.9 bits (74), Expect = 0.069
Identities = 25/71 (35%), Positives = 33/71 (46%)
Frame = +1
Query: 190 RSFDRKRH*GLDQERILW*H*EGHARYCQMRKEQGRFLR*APVLLDEGHRHQRQDAHPHR 369
R DR R G D ER GH R+ + +++ R A D GH H+R DA
Sbjct: 367 RDRDRDRDRGRDYERD---RDRGHDRHRERGRDRERDYERASHERDRGHMHER-DAEFAN 422
Query: 370 GEPLRDRPRGH 402
GEP D+ G+
Sbjct: 423 GEPKHDQEYGY 433
>01_06_1171 -
35089719-35090336,35090596-35090715,35090851-35091108,
35091934-35092563
Length = 541
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -1
Query: 432 PGPPSRNACLMSPRSISERLTTMRMS 355
P PPSRN L+SPRS + L R S
Sbjct: 489 PSPPSRNQHLLSPRSSTSALLPPRTS 514
>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 90 PPLVKVNGEPTNQSSTPSLSLAPISS*DRSSPSTKL*PEKTL 215
P ++K + P+ ++PS S A D S+PST PE+T+
Sbjct: 2006 PAVIKSSDTPSLNLNSPSSSSAGSRGQDASTPSTFEEPERTM 2047
>02_05_0889 -
32532495-32533832,32533919-32534151,32534321-32534461,
32534564-32535521
Length = 889
Score = 27.9 bits (59), Expect = 4.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 483 KRRPXNVIRLTIGANWVPG 427
+R+ N++R T+G NW PG
Sbjct: 169 RRKEQNMVRQTVGFNWGPG 187
>07_01_0288 - 2097361-2097855
Length = 164
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +1
Query: 313 PVLLDEGHRHQRQDAHPHRGEPLRDRPRGHQAGIPRGG 426
PV + E H H R P R P R R H+ +P G
Sbjct: 15 PVFVQERHIHIRDRDSPQRLPPPLLRDRQHRRRVPAAG 52
>01_04_0076 +
15780981-15780996,15781277-15783109,15783186-15783304,
15783422-15783724
Length = 756
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 281 VKSKVGFFAERLYYSMKGIGTNDKTLIRIVVSRSEIDLGDIKQA 412
V+S V FA Y ++K + N K L+R+ S LG +KQA
Sbjct: 412 VRSGVTRFATA-YLNLKSLLDNKKELVRLFKSNEMEQLGYLKQA 454
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,762,074
Number of Sequences: 37544
Number of extensions: 261635
Number of successful extensions: 887
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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