Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302G02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    29   0.42 
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    26   3.9  
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    26   3.9  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    26   3.9  
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    25   5.2  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    25   5.2  
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.8  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    25   6.8  
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    25   6.8  
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   6.8  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 375 QVQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIGMFDKD 521
           +V++ F+  DKD +G+IT  EL   L +  G+  S+     MI   D D
Sbjct: 86  EVREAFKVFDKDGNGYITVEELTHVLTSL-GERLSQEEVADMIREADTD 133



 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 375 QVQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIGMFDKD 521
           + ++ F   D+DQ G ITS EL   ++ + GQ+ +      MI   D D
Sbjct: 13  EFREAFSLFDRDQDGNITSNEL-GVVMRSLGQSPTAAELQDMINEVDAD 60


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 390 FRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMI 503
           FR  DKD SG+I + +  +  +   G+  S+    LM+
Sbjct: 84  FRVFDKDNSGYIETAKF-ADYMKTLGEKLSDNEVQLMV 120


>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = +3

Query: 282 GQAAYGGMPPGQLEIGHGPYPSIGVGGTITPQVQQWFRAVDKDQSGFITSTELRSALVNA 461
           G+ A+GG     L+   GP   + V G I    + W   +    SG + +TEL S  V +
Sbjct: 304 GRQAWGGFSREALK-NWGPLCRLAVPGVIMICSEYWAFELVTFASGVLGTTELASMSVLS 362

Query: 462 QGQTFS 479
              T S
Sbjct: 363 TTSTLS 368


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -1

Query: 521 VFVEHTNHQIASSFGKSLT 465
           V+  H N QI SSFG SLT
Sbjct: 33  VWTGHKNGQIKSSFGPSLT 51


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 252 LQMAYNSGYPGQAAYGG 302
           +Q  Y+ GYPG   YGG
Sbjct: 61  MQNKYSEGYPGARYYGG 77


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 348 WKGTVHVQFLIGLVAFHRKLPVLDIRNCRPFVVS 247
           W G    + L+GL+     + ++DI++ RP + S
Sbjct: 297 WTGNPKDKELVGLIPLLEFIAIMDIKDVRPVLKS 330


>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 121 RPLIRSVSKLSNLKTFHKNKYKFFNSS 201
           RP+ +S S++S L+ F+K   K F++S
Sbjct: 34  RPIQKSFSEISILRVFNKPPIKKFHNS 60


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 309 PGQLEIGHGPYPSIGVGGTITP 374
           P  L +GH P PS     ++TP
Sbjct: 207 PSNLPLGHPPPPSDSANSSVTP 228


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 390 FRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIGMFDKD 521
           F+  DKD +G I   ELR  L +   +  +E    L+ G+  KD
Sbjct: 83  FQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVKD 126


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = +3

Query: 51  HQKY*SLNFSLRLQQNTFVVTIPP----STNKICI 143
           H  Y  LNFSLR  +N  ++   P    S N +CI
Sbjct: 42  HGHYCLLNFSLRENKNYLIIVYLPIEGFSANHMCI 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,152,181
Number of Sequences: 5004
Number of extensions: 43296
Number of successful extensions: 102
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)