Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302G02f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36462| Best HMM Match : efhand (HMM E-Value=5.8e-09) 80 9e-16
SB_47179| Best HMM Match : Carboxyl_trans (HMM E-Value=0) 64 9e-11
SB_3425| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.047
SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39) 34 0.062
SB_44952| Best HMM Match : efhand (HMM E-Value=3.4e-39) 34 0.062
SB_36414| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.062
SB_7126| Best HMM Match : efhand (HMM E-Value=2e-26) 33 0.11
SB_58660| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25
SB_27027| Best HMM Match : efhand (HMM E-Value=8.7e-08) 32 0.25
SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37) 29 1.8
SB_23574| Best HMM Match : efhand (HMM E-Value=2e-05) 29 1.8
SB_57618| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_38969| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_37793| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_22989| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0) 28 5.4
SB_8146| Best HMM Match : efhand (HMM E-Value=1.2e-16) 28 5.4
SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21) 28 5.4
SB_20632| Best HMM Match : Cu_bind_like (HMM E-Value=0.51) 28 5.4
SB_16925| Best HMM Match : efhand (HMM E-Value=3e-22) 27 7.1
SB_49247| Best HMM Match : Phage_integr_N (HMM E-Value=0.38) 27 9.4
SB_28844| Best HMM Match : SpoVT_AbrB (HMM E-Value=4.7) 27 9.4
SB_25738| Best HMM Match : Fer4 (HMM E-Value=1.1) 27 9.4
SB_43892| Best HMM Match : efhand (HMM E-Value=2.3e-11) 27 9.4
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08) 27 9.4
>SB_36462| Best HMM Match : efhand (HMM E-Value=5.8e-09)
Length = 402
Score = 80.2 bits (189), Expect = 9e-16
Identities = 46/100 (46%), Positives = 61/100 (61%), Gaps = 13/100 (13%)
Frame = +3
Query: 261 AYNSGYPGQAAYGGMPPGQ--LEIG-HGP----YP---SIGVGGT---ITPQVQQWFRAV 401
+YN GY G YG P G + G +GP YP S GG + P + QWF+AV
Sbjct: 51 SYNPGYGGHQGYGQQPHGYGGQQYGQYGPPPSAYPGQFSAPTGGPPPGVDPSLWQWFQAV 110
Query: 402 DKDQSGFITSTELRSALVNAQGQTFSETACNLMIGMFDKD 521
D+D++G IT++ELR+ALVN+ F+E C +MIGMFDKD
Sbjct: 111 DQDRTGKITASELRAALVNSNWSQFNEETCRMMIGMFDKD 150
>SB_47179| Best HMM Match : Carboxyl_trans (HMM E-Value=0)
Length = 622
Score = 63.7 bits (148), Expect = 9e-11
Identities = 37/85 (43%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Frame = +3
Query: 273 GYPGQAAYGGMPPGQLEIGHGPYPSIGVGGT--ITPQVQQWFRAVDKDQSGFITSTELRS 446
GYP Q PPG G+G PS G P + WF AVD+D+SG I+S EL
Sbjct: 427 GYPPQQP--SYPPG----GYGGPPSAPYGAPPGADPTLWNWFIAVDRDRSGAISSDELEQ 480
Query: 447 ALVNAQGQTFSETACNLMIGMFDKD 521
AL+N F++ C LMIG+FD D
Sbjct: 481 ALMNNNWSRFNQETCRLMIGLFDHD 505
>SB_3425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 34.7 bits (76), Expect = 0.047
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +3
Query: 378 VQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIGMFDKD 521
++Q FR D++ G+I++ ELR A V G ++ +IGM D+D
Sbjct: 219 LRQAFRVFDRNGDGYISAEELRVA-VTTLGDALTQDEAEELIGMLDQD 265
>SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39)
Length = 659
Score = 34.3 bits (75), Expect = 0.062
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +3
Query: 375 QVQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIGMFDKD 521
++++ FR DKD +GFI++ ELR + N G+ ++ + MI D D
Sbjct: 74 EIREAFRVFDKDGNGFISAAELRHVMTNL-GEKLTDEEVDEMIREADID 121
>SB_44952| Best HMM Match : efhand (HMM E-Value=3.4e-39)
Length = 250
Score = 34.3 bits (75), Expect = 0.062
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +3
Query: 375 QVQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIGMFDKD 521
++++ FR DKD +GFI++ ELR + N G+ ++ + MI D D
Sbjct: 74 EIREAFRVFDKDGNGFISAAELRHVMTNL-GEKLTDEEVDEMIREADID 121
>SB_36414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 34.3 bits (75), Expect = 0.062
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +3
Query: 375 QVQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIGMFDKD 521
++++ FR DKD +GFI++ ELR + N G+ ++ + MI D D
Sbjct: 85 EIREAFRVFDKDGNGFISAAELRHVMTNL-GEKLTDEEVDEMIREADID 132
>SB_7126| Best HMM Match : efhand (HMM E-Value=2e-26)
Length = 213
Score = 33.5 bits (73), Expect = 0.11
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 375 QVQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIGMFDKD 521
++++ FR DKD +GFI++ ELR + N G+ ++ MI D D
Sbjct: 49 EIREAFRVFDKDGNGFISAAELRHVMTNL-GEKLTDEEVEEMIMEADID 96
>SB_58660| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 960
Score = 32.3 bits (70), Expect = 0.25
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 381 QQWFRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIGMFD 515
+ +F DKD+ GFI EL AL + Q+ + N ++GM +
Sbjct: 315 RHYFTKNDKDKDGFINHRELLKALRDLYAQSITVEQVNAILGMLE 359
>SB_27027| Best HMM Match : efhand (HMM E-Value=8.7e-08)
Length = 103
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +3
Query: 402 DKDQSGFITSTELRSALVNAQGQTFSETACNLMIGMFDKD 521
D+D SG+I+ ELR + ++ G+ SE +I MFDK+
Sbjct: 4 DRDGSGYISPEELRYVVCHS-GEKLSEDEARELIDMFDKN 42
>SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37)
Length = 732
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 237 TFSETLQMAYNSGYPGQAAYGGMPPGQLEIGHGPYPSIGVGGTITPQ 377
+F + + +SG+ GQ G P GQ HG G+GG + Q
Sbjct: 608 SFGQAAPTSQSSGFGGQGGMFGTPGGQQSGFHGGIGGGGMGGGFSGQ 654
>SB_23574| Best HMM Match : efhand (HMM E-Value=2e-05)
Length = 69
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 390 FRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIGMFD 515
F+ D++ +G I + ELR L + + E NLM+G D
Sbjct: 11 FKVFDRNGNGLIGAAELRHLLASLGDKLSDEEVDNLMVGFED 52
>SB_57618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +3
Query: 321 EIGHGPYPSIGVGGTITPQVQQWFRA----VDKDQSGFITSTELRSAL 452
E GHG P GVGG + R+ +D S F+ +TE +S++
Sbjct: 96 EAGHGKGPCDGVGGAAKRMADEAVRSGKVVIDDAHSFFVWATEYQSSV 143
>SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1060
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +3
Query: 321 EIGHGPYPSIGVGGTITPQVQQWFRA----VDKDQSGFITSTELRSAL 452
E GHG P GVGG + R+ +D S F+ +TE +S++
Sbjct: 917 EAGHGKGPCDGVGGAAKRMADEAVRSGKVVIDDAHSFFVWATEYQSSV 964
>SB_38969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 200
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +3
Query: 321 EIGHGPYPSIGVGGTITPQVQQWFRA----VDKDQSGFITSTELRSAL 452
E GHG P GVGG + R+ +D S F+ +TE +S++
Sbjct: 32 EAGHGKGPCDGVGGAAKRMADEAVRSGKVVIDDAHSFFVWATEYQSSV 79
>SB_37793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +3
Query: 321 EIGHGPYPSIGVGGTITPQVQQWFRA----VDKDQSGFITSTELRSAL 452
E GHG P GVGG + R+ +D S F+ +TE +S++
Sbjct: 470 EAGHGKGPCDGVGGAAKRMADEAVRSGKVVIDDAHSFFVWATEYQSSV 517
>SB_22989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +3
Query: 321 EIGHGPYPSIGVGGTITPQVQQWFRA----VDKDQSGFITSTELRSAL 452
E GHG P GVGG + R+ +D S F+ +TE +S++
Sbjct: 66 EAGHGKGPCDGVGGAAKRMADEAVRSGKVVIDDAHSFFVWATEYQSSV 113
>SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)
Length = 1182
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +3
Query: 321 EIGHGPYPSIGVGGTITPQVQQWFRA----VDKDQSGFITSTELRSAL 452
E GHG P GVGG + R+ +D S F+ +TE +S++
Sbjct: 176 EAGHGKGPCDGVGGAAKRMADEAVRSGKVVIDDAHSFFVWATEYQSSV 223
>SB_8146| Best HMM Match : efhand (HMM E-Value=1.2e-16)
Length = 285
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 369 TPQVQQWFRAVDKDQSGFITSTELRSAL 452
T +++ F+++DKD GFIT +L+ +
Sbjct: 72 TQEIRMAFKSMDKDGDGFITFGDLKKTM 99
>SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21)
Length = 198
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +3
Query: 366 ITPQVQQWFRAVDKDQSGFITSTELRSAL 452
+T ++++ F+ +D+D SG+I E+ +AL
Sbjct: 66 VTLRLEKIFQEIDEDNSGYIDHNEISNAL 94
>SB_20632| Best HMM Match : Cu_bind_like (HMM E-Value=0.51)
Length = 388
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +3
Query: 321 EIGHGPYPSIGVGGTITPQVQQWFRA----VDKDQSGFITSTELRSAL 452
E GHG P GVGG + R+ +D S F+ +TE +S++
Sbjct: 176 EAGHGKGPCDGVGGAAKRMADEAVRSGKVVIDDAHSFFVWATEYQSSV 223
>SB_16925| Best HMM Match : efhand (HMM E-Value=3e-22)
Length = 132
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +3
Query: 375 QVQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIGMFDKD 521
+++ F DKD SG I + ELR ++ G+ S+ MI DKD
Sbjct: 4 EMRDVFSMFDKDNSGSIDTDELRD-VMRELGENPSDKEIQDMIADADKD 51
>SB_49247| Best HMM Match : Phage_integr_N (HMM E-Value=0.38)
Length = 223
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 434 CRSNESRLIFIYSSEPLLYLGRNSTPNSNGRVRSMS 327
CR ESR F++ +P+L L R N ++ +S
Sbjct: 175 CRPTESRYAFVWDIQPVLNLLRQWVANEELSLKELS 210
>SB_28844| Best HMM Match : SpoVT_AbrB (HMM E-Value=4.7)
Length = 592
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +3
Query: 321 EIGHGPYPSIGVGGTITPQVQQWFRA----VDKDQSGFITSTELRSAL 452
+ GHG P GVGG + R+ +D S F+ +TE +S++
Sbjct: 364 QAGHGKGPCDGVGGAAKRMADEAVRSGKVVIDDTHSFFVWATEYQSSV 411
>SB_25738| Best HMM Match : Fer4 (HMM E-Value=1.1)
Length = 241
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
Frame = -2
Query: 361 PPTPMEGYGP--CPISNW 314
PP P GYGP C I NW
Sbjct: 160 PPPPPSGYGPAKCVIVNW 177
>SB_43892| Best HMM Match : efhand (HMM E-Value=2.3e-11)
Length = 353
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 366 ITPQVQQWFRAVDKDQSGFITSTE 437
IT +V++ F D+D+SGFI E
Sbjct: 307 ITAEVEELFNLYDRDESGFIDFRE 330
>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
Length = 1258
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
Frame = -2
Query: 361 PPTPMEGYGP--CPISNW 314
PP P GYGP C I NW
Sbjct: 548 PPPPPSGYGPAKCVIVNW 565
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,720,842
Number of Sequences: 59808
Number of extensions: 316656
Number of successful extensions: 814
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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