Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302G02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   3.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   3.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.3  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   5.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.7  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 509 HTNHQIASSFGK 474
           H NH++AS FG+
Sbjct: 353 HDNHRVASRFGR 364


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
 Frame = +3

Query: 180 VQILQ*QLINRHGSIVAT*TFSETLQMAYNSGYPGQAAYGGMPPGQ-LEIGHGPYPSIGV 356
           V++L   L+N    + A   +   L   Y+  YP       +  GQ +         +  
Sbjct: 697 VEVLPENLVNAQQQVQAVRNYYANLYTKYHGQYPNTQIQNPVGQGQDMTYSVQGVGVVNA 756

Query: 357 GGTITPQVQQW 389
           GG +  Q   W
Sbjct: 757 GGWLGQQGNSW 767


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 285 QAAYGGMPPGQLEIGHGPYPSIGVGGTITP 374
           Q  YG   PG  ++G   Y +  +  T TP
Sbjct: 207 QNGYGRHLPGHAQMGRPSYTTATMATTSTP 236


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 205 LIDTEALLQHRHLARHYKWPTIPDIQD 285
           LI  E L +H HL  H+       +QD
Sbjct: 132 LIKQETLQRHHHLQNHHHHLQSTAVQD 158


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 324 IGHGPYPSIGVGGTITPQVQQ 386
           + + P  +IG G T TPQ  Q
Sbjct: 161 VAYEPVWAIGTGKTATPQQAQ 181


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 158 KLDSLDTDLISGRRYSND 105
           KL+SLDT+ I    Y+N+
Sbjct: 188 KLNSLDTEQILDDMYNNN 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,779
Number of Sequences: 438
Number of extensions: 3317
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)