Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F12f
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    27   0.98 
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    26   2.3  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   5.2  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    25   6.9  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    25   6.9  
SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomy...    24   9.1  

>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 27.5 bits (58), Expect = 0.98
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 277 FALNFSFLNLIISDTSKFDATMACGLPGGVI 185
           F++N S   +I    S  D T+ACG  GG++
Sbjct: 118 FSINESPYPIIAVSQSPIDKTIACGFGGGLV 148


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 292 NSIQGFALNFSFLNLIISDTSKFDATMACGLPGGVIPFMVD 170
           N+ +GF L  S      SD  K  ++    LP   IPF VD
Sbjct: 104 NTSKGFHLQSSDKKYADSDRPKLSSSSLLSLPDQKIPFPVD 144


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +3

Query: 201  KPQAMVASNLEVSDMIKLRKLKFSAKPWMELNVMAVEAFRVTVSRVCDTLDITLR 365
            KP  +V SN++ + ++ L KL  +   W+  ++     F   +      +DI  R
Sbjct: 1236 KPNRLVPSNVKSNILVLLCKLLPTNTKWLHASISQTNDFDTIMHLYTSMVDIKAR 1290


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 440 IHVLFDQDKIYPYLGILTRCYKSRWS*SNVQSIAHTGN-RHAESFD 306
           I  LF  +++Y     L  CY+   + SNVQ I++    ++ E FD
Sbjct: 123 IDTLFRGEEMYGRFMDLNECYEEYINLSNVQHISYLEYLKNLEDFD 168


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = +2

Query: 242 YDQVEKAKVQCKALDGIECYGSRSFPRDGFPCVRYSGHYFTTTLIYSILLGFLGMDRFCL 421
           +D ++     CK +  ++C  S+S  +    CV     YF T L        L  + FC 
Sbjct: 728 FDSLQDILRVCKGMH-LKCDTSKSLAKSLDECVDPKEPYFNTLLRILTTRCMLSAEYFCS 786

Query: 422 G 424
           G
Sbjct: 787 G 787


>SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 284

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 168 LSTIKGITPPGKPQAMVASNLEVSDMIKLRKLKFSAKPWMELNV 299
           LST+   +P    +  V S L VSD++ L  L F A   +E ++
Sbjct: 96  LSTLYCDSPRIPAEVNVCSVLAVSDLLGLDTLAFEASSLIEKSI 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,787,113
Number of Sequences: 5004
Number of extensions: 34762
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)