Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F12f
         (444 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0254 + 15857809-15858018,15858151-15858264,15859809-158600...    30   0.96 
04_04_0464 - 25405629-25405665,25406644-25406710,25408112-254083...    27   6.8  

>07_03_0254 +
           15857809-15858018,15858151-15858264,15859809-15860010,
           15860245-15860319,15860406-15860498,15860554-15860636,
           15861067-15861180,15861632-15861746,15861840-15862030,
           15862102-15862218,15862514-15862594,15862729-15862964,
           15863219-15863258,15863393-15863968
          Length = 748

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 143 LEFLDCDEPIDHKGNHTARQATGHGCVKFGGVRYDQVEKAKVQCK 277
           L +  C E + ++    A   T    V F  V++ Q+ K KVQCK
Sbjct: 375 LSYSTCAEQLLYEVGDPANYITPDLVVDFRDVKFQQISKDKVQCK 419


>04_04_0464 -
           25405629-25405665,25406644-25406710,25408112-25408373,
           25408989-25409198,25409818-25410006,25410087-25410548,
           25410889-25410936,25411972-25412301
          Length = 534

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
 Frame = +2

Query: 89  SKEPYRPLGPLVKCSYLPL---EFLDCDEPIDHKGNHTARQATGHGCVKFGGVRYDQVE- 256
           S+  YRP    V   Y  +   EF D   P+ H G  T +    H   + GG    Q++ 
Sbjct: 129 SEMDYRPSRMAVVAKYAEVFIREFFD-QNPLSHVGIVTMKDGISHRLTEIGGSPESQIKA 187

Query: 257 -KAKVQC 274
              K++C
Sbjct: 188 LMGKLEC 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,872,894
Number of Sequences: 37544
Number of extensions: 237902
Number of successful extensions: 514
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)