Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F12f
         (444 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)             113   5e-26
SB_35368| Best HMM Match : UIM (HMM E-Value=6.3e-06)                   30   0.99 
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.99 
SB_14362| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.065)             29   1.7  
SB_17059| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-34)                 29   2.3  
SB_25685| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.0  
SB_58829| Best HMM Match : HC2 (HMM E-Value=5.8)                       28   4.0  
SB_14335| Best HMM Match : DUF1315 (HMM E-Value=2.7)                   27   5.3  
SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_30085| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_31572| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_2550| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  

>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
          Length = 1168

 Score =  113 bits (273), Expect = 5e-26
 Identities = 47/86 (54%), Positives = 62/86 (72%)
 Frame = +2

Query: 101 YRPLGPLVKCSYLPLEFLDCDEPIDHKGNHTARQATGHGCVKFGGVRYDQVEKAKVQCKA 280
           + P GPLV C YLPL+FLDC++P+D KGN +A++  G+GCVKFGG RYD+VE+ +V C  
Sbjct: 45  FDPRGPLVDCQYLPLDFLDCEQPLDLKGNSSAKKEQGYGCVKFGGSRYDEVERTRVWCTV 104

Query: 281 LDGIECYGSRSFPRDGFPCVRYSGHY 358
           LDGIECYG R F  +  P   ++  Y
Sbjct: 105 LDGIECYGERRFLAEKCPVSSHALEY 130


>SB_35368| Best HMM Match : UIM (HMM E-Value=6.3e-06)
          Length = 362

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 254 EKAKVQCKALDGIECYGSRSFPRDGFPCVRY 346
           ++  V CKALD ++C G R+F +  F C RY
Sbjct: 72  KEVSVSCKALDFVDCKGPRNFTKT-FSC-RY 100


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +3

Query: 165  NLSTIKGITPPGKPQAMVASNLEVSDMIKLRKLKFSAKPWMELNVMAVE 311
            N++  +G  PP     + A + +VSD +  + ++ +AK W+ LN  + E
Sbjct: 1081 NINVQEGKVPPEARYKIPAYDPDVSDKLTFKVMEGNAKEWVTLNATSGE 1129


>SB_14362| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.065)
          Length = 215

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 200 QATGHGCVKFGGVRYDQVEKAKVQCKALDGIECYGSRSFPRDGFPCV 340
           +A GH  V    +    +E  K   + L G+  +  R    DGFPCV
Sbjct: 84  RARGHNVVAAFALLCSHIEFHKNNPELLKGLNAFELRYILEDGFPCV 130


>SB_17059| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-34)
          Length = 333

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = -3

Query: 340 HTRETVTRKASTAITFNSIQGFALNFSFLNLIISDTSKFDATMACGLPGGVIPFMVDRF 164
           H     TR+    I FN    F++ F+ LN  I  TS     +AC     VIP  +  F
Sbjct: 127 HNDIITTRRCLMVIIFN--WAFSILFASLNFYIPPTSMTSLWIACAFITVVIPLTIISF 183


>SB_25685| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 152 LDCDEPIDHKGNHTARQATGHGCVKFGGVR 241
           L CD P   KGN   + A    C++FG  R
Sbjct: 514 LPCDSPFTQKGNPYKKAALERLCIEFGLTR 543


>SB_58829| Best HMM Match : HC2 (HMM E-Value=5.8)
          Length = 959

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +2

Query: 374 IYSILLGFLGMD-RFCLGQTGHG 439
           I  I  G LGMD R C+GQTG+G
Sbjct: 164 IQEIAWGKLGMDTRDCMGQTGNG 186



 Score = 27.9 bits (59), Expect = 4.0
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +2

Query: 206 TGHGCVKFGGVRYDQVEKAKVQCKALDGIECYGSRSFPRDGFPCVRYSGHYFTTTLIYSI 385
           TG+G  +  G   + +++     + +D  +C G      +G+  +    H      I  I
Sbjct: 364 TGNGYKRLHGANGEWIQEIAWGKRGMDTRDCMGQTG---NGYERL----HGANGEWIQEI 416

Query: 386 LLGFLGMD-RFCLGQTGHG 439
             G  GMD R C+GQTG+G
Sbjct: 417 AWGKRGMDTRDCMGQTGNG 435



 Score = 27.5 bits (58), Expect = 5.3
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +2

Query: 206 TGHGCVKFGGVRYDQVEKAKVQCKALDGIECYGSRSFPRDGFPCVRYSGHYFTTTLIYSI 385
           TG+G  +  G   + +++     + +D  +C G      +G+  +    H      I  I
Sbjct: 183 TGNGYKRLHGANGEWIQEIAWGKRGMDTRDCMGQTG---NGYKRL----HGANGEWIREI 235

Query: 386 LLGFLGMD-RFCLGQTGHG 439
             G  GMD R C+GQTG+G
Sbjct: 236 AWGKRGMDIRDCMGQTGNG 254


>SB_14335| Best HMM Match : DUF1315 (HMM E-Value=2.7)
          Length = 1223

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 152 LDCDEPIDHKGNHTARQATGHGCVKFG 232
           L CD P   KGN   + A    C++FG
Sbjct: 139 LPCDSPFTQKGNPYKKAAFERLCIEFG 165


>SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1616

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 161  DEPIDHKGNHTARQATGHGCVKFG 232
            D P   KGNH  + A    C++FG
Sbjct: 1497 DSPFTQKGNHYKKAAFERLCIEFG 1520


>SB_30085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 472

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 335 CVRYSGHYFTTTLIYSILLGFLGMDRFCL 421
           CV  S +Y+    +  +LLGF+G++R+ L
Sbjct: 48  CVTCSTNYWAIFGVVPMLLGFIGINRYYL 76


>SB_31572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 161 DEPIDHKGNHTARQATGHGCVKFG 232
           D P   KGNH  + A    C++FG
Sbjct: 60  DSPFTQKGNHYKKTAYERLCIEFG 83


>SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1387

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 161 DEPIDHKGNHT 193
           DEPI H+GNHT
Sbjct: 915 DEPISHQGNHT 925


>SB_2550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 86  ISKEPYRPLGPLVKCSYLP--LEFLDCDE 166
           +SKEP  P+  ++KC  +P  +EFL  ++
Sbjct: 782 LSKEPNPPIDDVIKCGVIPKFVEFLQRED 810


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,756,062
Number of Sequences: 59808
Number of extensions: 286003
Number of successful extensions: 807
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)