Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F12f
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14745-13|AAR25658.1|  210|Caenorhabditis elegans Hypothetical p...   105   1e-23
AF003740-5|AAL08031.1|  195|Caenorhabditis elegans Hypothetical ...    45   3e-05
AL161712-16|CAC35892.1|  329|Caenorhabditis elegans Hypothetical...    40   0.001
U80454-4|AAB37876.3|  896|Caenorhabditis elegans Prion-like-(q/n...    27   4.6  
Z35637-1|CAA84687.1|  363|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>L14745-13|AAR25658.1|  210|Caenorhabditis elegans Hypothetical
           protein C02F5.13 protein.
          Length = 210

 Score =  105 bits (252), Expect = 1e-23
 Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 7/113 (6%)
 Frame = +2

Query: 107 PLGPLVKCSYLPLEFLDCDEPIDHKG-NHTARQATGHG------CVKFGGVRYDQVEKAK 265
           PLGP+V+C +L   F+ C++P+   G   T +Q           C+K GG R + VE   
Sbjct: 56  PLGPVVECRFLENSFILCEDPVPLYGPGQTGQQPANESFRNEGKCLKMGGYRAEDVEFTN 115

Query: 266 VQCKALDGIECYGSRSFPRDGFPCVRYSGHYFTTTLIYSILLGFLGMDRFCLG 424
           V+C+ L  IEC+G R+F +   PC+ Y+GHYF TTL+YSI LG + +DRFCLG
Sbjct: 116 VKCRVLPCIECHGPRTFTKST-PCIIYNGHYFLTTLLYSIFLGVVAVDRFCLG 167


>AF003740-5|AAL08031.1|  195|Caenorhabditis elegans Hypothetical
           protein C41D11.9 protein.
          Length = 195

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 22/52 (42%), Positives = 31/52 (59%)
 Frame = +2

Query: 269 QCKALDGIECYGSRSFPRDGFPCVRYSGHYFTTTLIYSILLGFLGMDRFCLG 424
           +C A   + C G R+F +   PC   SG+ +T T+I S++LG  G DRF LG
Sbjct: 105 KCSAHSSVICMGQRNFYKR-IPCNWSSGYSWTKTMILSVVLGGFGADRFYLG 155


>AL161712-16|CAC35892.1|  329|Caenorhabditis elegans Hypothetical
           protein Y66D12A.21 protein.
          Length = 329

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = +2

Query: 263 KVQCKALDGIECYGSRSFP---RDGFPCVRYSGHY-FTTTLIYSILLGFLGMDRFCLG 424
           +V C+  + I+C G   F    R       Y  H  +TTT++ SI LGF G+DR  LG
Sbjct: 54  QVMCETAEHIKCVGKDQFGIFNRTVPSACHYGAHVSYTTTVLLSIFLGFFGIDRIYLG 111


>U80454-4|AAB37876.3|  896|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 66
           protein.
          Length = 896

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
 Frame = -3

Query: 361 KVMSRVSHTRETVTRKASTAITFNSIQGF----ALNFSFLNLIISDTSKFDATMACG--- 203
           K +  + HT   V  K S  I+FN  Q F     L F+++       S +D+T + G   
Sbjct: 259 KAVKTIKHTLNWVIIKVSKEISFNFFQTFRLAYILMFAYMLCRYPFYSSYDSTSSLGFWE 318

Query: 202 -LPGGVIPFMVDRF 164
            LP   +P + D F
Sbjct: 319 MLPFLFVPAIFDDF 332


>Z35637-1|CAA84687.1|  363|Caenorhabditis elegans Hypothetical
           protein C03C10.2 protein.
          Length = 363

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 74  ESDPISKEPYRPLGPLVKCSYLPLEFLD 157
           E DP+ + PY  L   +KC Y P   L+
Sbjct: 322 ECDPVVELPYEKLLECLKCLYSPKSLLE 349


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,935,260
Number of Sequences: 27780
Number of extensions: 199351
Number of successful extensions: 446
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)