Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F12f
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   1.5  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   3.5  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   3.5  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   4.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   4.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   6.1  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 324 TVSRVCDTLDITLRP 368
           T+SR+ D  DI LRP
Sbjct: 40  TISRILDGYDIRLRP 54


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +2

Query: 197 RQATGHGCVKFGGVRYDQVEKAKVQCKALDGIEC 298
           R  T H C    G++    E   ++ K  + +EC
Sbjct: 102 RHITLHHCYDADGIKLMNEENGVMEIKIREPVEC 135


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +2

Query: 197 RQATGHGCVKFGGVRYDQVEKAKVQCKALDGIEC 298
           R  T H C    G++    E   ++ K  + +EC
Sbjct: 102 RHITLHHCYDADGIKLMNEENGVMEIKIREPVEC 135


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 308 DCHNIQFHPRLCTEL 264
           DC NI   P++ TEL
Sbjct: 122 DCRNIGAVPKMATEL 136


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +2

Query: 161 DEPIDHKGNHTARQATGHGCVKFGG 235
           ++P+D   N       GHG  K+ G
Sbjct: 263 EKPLDVSSNDKVHPLYGHGVCKWPG 287


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 331 ETVTRKASTAITFNSIQGFALNFSFLNLIISDTSKF 224
           +T  +  +TAI  + +  F   FSFL L +   S F
Sbjct: 347 DTCCQGRATAIYIDKVSRFFFPFSFLILNVVYWSTF 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,366
Number of Sequences: 438
Number of extensions: 2564
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)