Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F12f
         (444 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g06820.1 68414.m00727 carotenoid isomerase, putative similar ...    28   3.3  
At5g03800.1 68418.m00347 exostosin family protein / pentatricope...    27   5.7  
At4g04220.1 68417.m00598 disease resistance family protein conta...    27   5.7  
At4g34370.1 68417.m04883 IBR domain-containing protein similar t...    27   7.5  
At2g41700.1 68415.m05151 ABC transporter family protein similar ...    27   7.5  
At3g58610.1 68416.m06532 ketol-acid reductoisomerase identical t...    26   10.0 
At3g49250.1 68416.m05382 expressed protein                             26   10.0 
At1g58050.1 68414.m06579 helicase domain-containing protein cont...    26   10.0 
At1g49015.1 68414.m05496 eukaryotic translation initiation facto...    26   10.0 
At1g12580.1 68414.m01461 protein kinase family protein contains ...    26   10.0 

>At1g06820.1 68414.m00727 carotenoid isomerase, putative similar to
           carotenoid isomerase from Lycopersicon esculentum
           [gi:19550437]; contains Pfam profile: PF02032 Phytoene
           dehydrogenase related enzyme
          Length = 595

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 278 ALDGIECYGSRSFPRDGFPCVRYSG 352
           A+DG+ C G   FP  G   V +SG
Sbjct: 536 AIDGLYCVGDSCFPGQGVIAVAFSG 560


>At5g03800.1 68418.m00347 exostosin family protein / pentatricopeptide
            (PPR) repeat-containing protein contains Pfam profiles:
            PF03016 exostosin family, PF01535 PPR repeat
          Length = 1388

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 59   IKAKSESDPISKEPYRPLGPL 121
            IKA S  DP+    Y PLGP+
Sbjct: 1022 IKAASMDDPVDDPDYVPLGPM 1042


>At4g04220.1 68417.m00598 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-2A [Lycopersicon
           pimpinellifolium] gi|3894389|gb|AAC78594
          Length = 811

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 301 ITFNSIQGFALNFSFLNLIISDTSKFDATMACGLPGGVIP 182
           ++FN+IQG    ++F+NL    TS     M C    G IP
Sbjct: 112 VSFNNIQGEIPGYAFVNL----TSLISLDMCCNRFNGSIP 147


>At4g34370.1 68417.m04883 IBR domain-containing protein similar to
           SP|Q94981 Ariadne-1 protein (Ari-1) {Drosophila
           melanogaster}; contains Pfam profile PF01485: IBR domain
          Length = 597

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 185 NHTARQATGHGCVKFGGVRYDQVEKAK 265
           +HT R   GH C ++   +  Q+E+AK
Sbjct: 318 DHTYRSIAGHSCGRYQDDKEKQMERAK 344


>At2g41700.1 68415.m05151 ABC transporter family protein similar to
           ATP-binding cassette transporter ABCA1 GI:18031705 from
           [Arabidopsis thaliana]
          Length = 1822

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 162 TNLSTIKGITPPGKPQAMVASNLEVSDMIKLRK 260
           T +S + G+ PP    A++  N  +++M ++RK
Sbjct: 527 TTISMLVGLLPPTSGDALILGNSIITNMDEIRK 559


>At3g58610.1 68416.m06532 ketol-acid reductoisomerase identical to
           ketol-acid reductoisomerase, chloroplast precursor (EC
           1.1.1.86) (Acetohydroxy-acid reductoisomerase)
           (Alpha-keto-beta-hydroxylacil reductoisomerase)
           (Swiss-Prot:Q05758) [Arabidopsis thaliana]
          Length = 591

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 410 YPYLGILTRCYKSRWS*SNVQSIAHTGNRHAE 315
           YP + IL  CY+   S S ++S+   G R  E
Sbjct: 387 YPCMEILYECYEDVQSGSEIRSVVLAGRRFYE 418


>At3g49250.1 68416.m05382 expressed protein
          Length = 420

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 69  NLKAIQFQKNHIGHSVL*LNVHIYRWNS 152
           NLK ++ QKN +  +++ L VH+ + NS
Sbjct: 73  NLKFLKSQKNKMDEAIVDLQVHMSKLNS 100


>At1g58050.1 68414.m06579 helicase domain-containing protein
           contains similarity to SP|P24785 Dosage compensation
           regulator (Male-less protein) (No action potential
           protein) {Drosophila melanogaster}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 1417

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -3

Query: 319 RKASTAITFNSIQGFALNFSFLNLIISDTSKF-DATMACGLPGGVIPFMVDRFVTI*EFQ 143
           R    A  FN + G   NFS+   ++  +S F  +  A GL    +P  V+ F +I + Q
Sbjct: 406 RSGWIAPKFNKVTGEGRNFSYTTSVMRKSSGFGKSRQAGGLVTIQLPHQVEDFESIQDAQ 465

Query: 142 R*I*TF 125
             +  F
Sbjct: 466 NRVAAF 471


>At1g49015.1 68414.m05496 eukaryotic translation initiation
           factor-related contains similarity to eukaryotic
           translation initiation factor 3 subunit 9 SP:Q9C5Z1
          Length = 227

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +2

Query: 143 LEFLDCDEPIDHKGNHTARQATGHGCVKFGGVRYDQVEKAKVQCKALD 286
           L   DC      KG + A Q T H C  F   R+++V+    +   +D
Sbjct: 91  LSVSDCKMYWQSKGKYLAVQVTRHTCSLFELFRFNKVQGITTEALEVD 138


>At1g12580.1 68414.m01461 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains similarity
           to calcium-dependent protein kinase GI:5162877 from
           [Marchantia polymorpha]
          Length = 522

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 198 GKPQAMVASNLEVSDMIKLRKLKFSAKPWMELNVMAVEAFR 320
           G P     +  ++ D ++   L+FSA+PW  +   A +  R
Sbjct: 240 GAPPFWGKTKSKIFDAVRAADLRFSAEPWDNITSYAKDLIR 280


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,507,441
Number of Sequences: 28952
Number of extensions: 188978
Number of successful extensions: 500
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)