Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    31   0.14 
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    26   3.0  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    26   3.9  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   6.8  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 20/65 (30%), Positives = 34/65 (52%)
 Frame = +2

Query: 107 TSPTKLSGSTTCSSVPTCLPN*LPTTNRFAATSTPAKLSGS*QRSCRYSTASAVSTCRYL 286
           ++P     STT +S  +     + +T+  +A+STP   + S   +   STA + +T   L
Sbjct: 356 STPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVL 415

Query: 287 PTSAV 301
           PTS+V
Sbjct: 416 PTSSV 420



 Score = 30.7 bits (66), Expect = 0.14
 Identities = 20/65 (30%), Positives = 34/65 (52%)
 Frame = +2

Query: 107 TSPTKLSGSTTCSSVPTCLPN*LPTTNRFAATSTPAKLSGS*QRSCRYSTASAVSTCRYL 286
           ++P     STT +S  +     + +T+  +A+STP   + S   +   STA + +T   L
Sbjct: 470 STPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVL 529

Query: 287 PTSAV 301
           PTS+V
Sbjct: 530 PTSSV 534


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 415 KISNLKFINLNLNRTTSNLK 474
           K+SNL+F N NL    SN++
Sbjct: 924 KVSNLEFSNFNLKEENSNMQ 943


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 349 TSPLNSPRNQPKNQRTVIGKRLKISNLKFINLN 447
           TS L   +N PKN+RTV  +RL  ++  F  LN
Sbjct: 328 TSNLERNQNSPKNKRTVSYERL-ANSFSFNALN 359


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 439  NLNLNRTTSNLKYISRLSSFSNPS 510
            + N N  T+ L Y+S LSS+S P+
Sbjct: 1160 DFNANVDTAGLWYVSALSSYSVPA 1183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,307,622
Number of Sequences: 5004
Number of extensions: 19366
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)