Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F10f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0458 + 14280953-14281866,14281964-14282912                       27   6.9  
02_03_0192 - 16204575-16204582,16204798-16204966,16205708-162057...    27   6.9  
04_04_0343 - 24526223-24527009,24527216-24527340,24527763-245282...    27   9.1  

>05_03_0458 + 14280953-14281866,14281964-14282912
          Length = 620

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +2

Query: 110 SPTKLSGST-TCSSVPTCLPN*LPTTNRFAATSTPAKLSGS*QRSCRYSTASAVSTCRYL 286
           +P  L  +T +CSS PT  P   PTT+  A++  P     S   S   +  SA +  R+L
Sbjct: 74  TPPPLPPTTLSCSSHPTPPPPPSPTTSPSASSLPPVPTPRSASSSKCSAPTSAQTPTRFL 133

Query: 287 PTSA 298
            +S+
Sbjct: 134 SSSS 137


>02_03_0192 -
           16204575-16204582,16204798-16204966,16205708-16205785,
           16206442-16206567,16206723-16206968,16207368-16207487,
           16207947-16208198,16208441-16208517,16208581-16208680,
           16210071-16210511
          Length = 538

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 489 QAADILEVAGSSVEVEVDKLEVGYFQPLPDYCSLI 385
           QA D+++V  S  +++ D L  G+ QP+PD   +I
Sbjct: 319 QAIDLIDV--SYEQIDRDMLMSGFIQPIPDLSPVI 351


>04_04_0343 -
           24526223-24527009,24527216-24527340,24527763-24528203,
           24528536-24528637
          Length = 484

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 5/26 (19%)
 Frame = -1

Query: 386 FLGWLR-----GELSGLVYLLWLKKD 324
           FL WL+     G L GLV+L+W++K+
Sbjct: 113 FLSWLKSANSLGALIGLVFLVWIEKN 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,835,012
Number of Sequences: 37544
Number of extensions: 136358
Number of successful extensions: 384
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)