Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F10f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39930| Best HMM Match : Keratin_B2 (HMM E-Value=0.25)               33   0.19 
SB_19516| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_21371| Best HMM Match : ParBc (HMM E-Value=9.5e-32)                 29   2.3  
SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12)                    29   3.1  
SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   7.1  
SB_15222| Best HMM Match : Glycoprotein_G (HMM E-Value=0.84)           27   7.1  

>SB_39930| Best HMM Match : Keratin_B2 (HMM E-Value=0.25)
          Length = 312

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +2

Query: 137 TCSSVPTCLPN*LPTTNRFAATSTPAKLSGS*QRSCRYSTASAVSTCRYLPTSAV 301
           TC +VPT   N L T +   A +T   +S     +C+     A++TC+ +PT A+
Sbjct: 160 TCETVPTKAINTLETVST-KAINTCKTVSTKAINTCKTVPTKAINTCKTVPTKAI 213



 Score = 31.5 bits (68), Expect = 0.44
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +2

Query: 104 RTSPTKLSGSTTCSSVPTCLPN*LPTTNRFAATSTPAKLSGS*QRSCRYSTASAVST-CR 280
           +T PTK     TC +VPT   N   T    A  +    L+ +    CR     A++T C+
Sbjct: 228 KTVPTK--AINTCKTVPTKAINTCKTVPTKAINTCKTVLTKAINTCCRTVPTKAINTCCK 285

Query: 281 YLPTSAV 301
            +PT A+
Sbjct: 286 TVPTKAI 292



 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 137 TCSSVPTCLPN*LPTTNRFAATSTPAKLSGS*QRSCRYSTASAVSTCRYLPTSAV 301
           TC +VPT   N   T     A +T   +      +C+     A++TC+ +PT A+
Sbjct: 193 TCKTVPTKAINTCKTVPT-KAINTCKTVPTKAINTCKTVPTKAINTCKTVPTKAI 246


>SB_19516| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 107 TSPTKLSGSTTCSSVPTCLPN*LPTTNRFAATSTP 211
           T+ T    +T  +++PT +P  LPTT    A +TP
Sbjct: 169 TTATTTEPTTVPTTIPTTIPTTLPTTEPTTAPTTP 203


>SB_21371| Best HMM Match : ParBc (HMM E-Value=9.5e-32)
          Length = 186

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -3

Query: 471 EVAGSSVEVEVDKLEVGYFQPLPDYCSLILGLVARRIEWAGL 346
           +V GS +E+E+D +E+  FQP  ++    L  +A  I+  G+
Sbjct: 35  KVVGSIIELELDAIEINPFQPRSNFNEETLKELATSIKELGV 76


>SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12)
          Length = 575

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 107 TSPTKLSGSTTCSSVPTCLPN*LPTTNRFAATSTP 211
           T+PT    +T  +++PT +P  +PTT    A +TP
Sbjct: 18  TAPTT-EQTTVATTIPTTIPTTVPTTEPTTAPTTP 51


>SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1752

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 274  G*YCTCC*IPTASLLGAR*FGWSACGCKA 188
            G YC C  +    L G R  GW  CG K+
Sbjct: 1177 GWYCWCSDVDGKELPGTRKRGWPDCGIKS 1205


>SB_15222| Best HMM Match : Glycoprotein_G (HMM E-Value=0.84)
          Length = 244

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 107 TSPTKLSGSTTCSSVPTCLPN*LPTTNRFAATSTP 211
           T+PT    +T  +++PT +P  +PTT    A +TP
Sbjct: 172 TAPTT-EPTTVPTTIPTTIPTTVPTTEPTTAPTTP 205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,758,579
Number of Sequences: 59808
Number of extensions: 149094
Number of successful extensions: 416
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)