Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F10f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81587-6|CAB04704.1|  417|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF016681-3|AAB66173.1|  159|Caenorhabditis elegans Hypothetical ...    29   2.7  
AC006637-1|AAK85476.2|  342|Caenorhabditis elegans Hypothetical ...    27   6.2  

>Z81587-6|CAB04704.1|  417|Caenorhabditis elegans Hypothetical
           protein T06G6.8 protein.
          Length = 417

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/56 (32%), Positives = 33/56 (58%)
 Frame = +2

Query: 128 GSTTCSSVPTCLPN*LPTTNRFAATSTPAKLSGS*QRSCRYSTASAVSTCRYLPTS 295
           G    S+ P+   + LPT++ + AT+TP+ L     R+ R  T+++ +T + LPT+
Sbjct: 206 GPAQTSTAPSTRSSKLPTSSVWKATTTPSDLPTKPSRT-RSLTSTSTTTAK-LPTT 259


>AF016681-3|AAB66173.1|  159|Caenorhabditis elegans Hypothetical
           protein F22E5.9 protein.
          Length = 159

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +1

Query: 421 SNLKFINLNLNRTTSNLKYISRLSSFSNPST 513
           S+LK  NLNL+   S+LK    LS F +P T
Sbjct: 72  SDLKMQNLNLSAENSDLKSRGWLSIFKSPKT 102


>AC006637-1|AAK85476.2|  342|Caenorhabditis elegans Hypothetical
           protein F41B4.1 protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 161 LPN*LPTTNRFAATSTPAKLSGS*QRSCRYSTASAVSTCRYLPTS 295
           LP+ +P   ++   +TP   +   Q +  Y T +  ST  Y PTS
Sbjct: 195 LPHQMPQYQQYHRHATPPAPAPQHQNNTNYYTENTTSTTSYHPTS 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,256,539
Number of Sequences: 27780
Number of extensions: 110934
Number of successful extensions: 387
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)