Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F10f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger) fa...    29   1.9  
At5g27960.1 68418.m03367 MADS-box protein (AGL90)                      27   5.8  
At5g26650.1 68418.m03175 MADS-box protein (AGL36) contains inter...    27   5.8  

>At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 683

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 191 FAATSTPAKLSGS*QRS--CRYSTASAVSTCRYLP 289
           F+  STP   SG+   S  CR STA+AVST   LP
Sbjct: 41  FSTPSTPRSDSGTGTYSLRCRTSTATAVSTTSSLP 75


>At5g27960.1 68418.m03367 MADS-box protein (AGL90)
          Length = 320

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 436 INLNLNRTTSNLKYISRLSSFSNP 507
           INLNLN   ++ +Y+++  SF NP
Sbjct: 243 INLNLNLNLNSNQYLNQQQSFMNP 266


>At5g26650.1 68418.m03175 MADS-box protein (AGL36) contains interpro
           domain: IPR002100 transcriptor factor, MADS box;
           contains Pfam profile PF00319: SRF-type transcription
           factor (DNA-binding and dimerisation domain)
          Length = 327

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 436 INLNLNRTTSNLKYISRLSSFSNP 507
           INLNLN   ++ +Y+++  SF NP
Sbjct: 245 INLNLNLNLNSNQYLNQQQSFMNP 268


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,969,020
Number of Sequences: 28952
Number of extensions: 105081
Number of successful extensions: 269
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)