Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    27   1.7  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    26   3.9  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    25   5.2  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   9.0  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    25   9.0  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    25   9.0  

>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 390 VNCYDYMAIHKKGGYGCTGELP 325
           +N  DY+ ++  GGYGC+ + P
Sbjct: 105 LNPSDYVIVYIPGGYGCSFDFP 126


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -2

Query: 205 NPSVIVSIXTNIIFTMNLYNSSRIGINNVHIKAFSSKDSSCIRNTNWKM 59
           +P  ++ + T   F   L++S R+ ++ VHI A  S+  + + NTN  M
Sbjct: 176 DPRSVMQVQTIRAFEF-LFSSHRLYLDTVHITAALSQVLAGLGNTNTSM 223


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +1

Query: 316 IVKRKFAGAPVASLLVDRHVVIAVDHSVAVAVLAKSSHVVLDG---LRGAVRVYSAARVG 486
           I +R  AG  + SLL   + VI V+H ++V         VL G   + G V +  + R G
Sbjct: 252 IKQRLKAGRVIRSLLATTNYVIVVEHDLSVLDYLSDFVCVLYGVPSMYGVVTLPYSVREG 311

Query: 487 I 489
           I
Sbjct: 312 I 312


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 373 VVIAVDHSVAVAVLAKSSHVVLDGLRGAVRVYSAARVG 486
           +VI  DH + V VLAK+   +++    A   Y A R+G
Sbjct: 279 LVIISDHFM-VPVLAKAIRTIIEAPEDASATYFAIRLG 315


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -3

Query: 111 KHFHQRILRVFEIQIGKCNLIEKIYIFFNNQNKLVF 4
           KH      R+  + I   NL    Y   N+ NKLVF
Sbjct: 99  KHLETATARIMGMDIDIVNLRHHDYTNSNSSNKLVF 134


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 113 KSIFIKGFFVYSKYKLENVI**KKYIYFLT 24
           +S F  G+   S +KL  +    +YIYFLT
Sbjct: 405 QSFFSVGYIAKSTFKLNPLRLRNQYIYFLT 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,125,548
Number of Sequences: 5004
Number of extensions: 43132
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)