Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960...    30   1.3  
05_04_0029 - 17321378-17321905,17323348-17323525,17323531-173239...    29   3.0  
09_02_0317 + 7186148-7186243,7186406-7186572,7186766-7186878,718...    28   4.0  
04_04_0534 + 26071227-26071811                                         28   4.0  
04_04_0351 + 24615858-24616448                                         27   6.9  
11_04_0225 + 15087975-15088123,15088908-15089154                       27   9.1  
03_01_0320 - 2510907-2512190                                           27   9.1  

>09_02_0466 +
           9599389-9599662,9600324-9600643,9600950-9601186,
           9601278-9601445,9601778-9601966
          Length = 395

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 265 LRSVLREDIDALVKHVYIVKR-KFAGAPVASLLVDRHVVIAVDHS 396
           L  +L+  I+ + KHV ++ R K  G P + LL   H  +++ H+
Sbjct: 244 LELLLQSGIELMGKHVTVIGRSKVVGLPTSLLLQRHHATVSIIHA 288


>05_04_0029 -
           17321378-17321905,17323348-17323525,17323531-17323910,
           17323936-17324052
          Length = 400

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -3

Query: 393 VVNCYDYMAIH-KKGGYGCTGELPFNYVNVFNQCINVFAQYRS 268
           +V C  Y+ I+  +GG GC        + V   C+NV   Y S
Sbjct: 350 LVPCLSYLKIYMSRGGVGCFERTMIVGILVIGVCVNVVGTYTS 392


>09_02_0317 +
           7186148-7186243,7186406-7186572,7186766-7186878,
           7187059-7187133,7187215-7187328,7187545-7187612,
           7187690-7187773,7187966-7188019,7188104-7188184,
           7188279-7188372,7188501-7188574,7188656-7188766,
           7188976-7189032,7189119-7189223,7189584-7189687,
           7190021-7190186,7190279-7190416
          Length = 566

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 480 SSCTVDPYCAAQTVQNYMRRFGQ 412
           S+ T+DP CA   VQ +   FGQ
Sbjct: 43  STTTIDPTCANMVVQEFPNTFGQ 65


>04_04_0534 + 26071227-26071811
          Length = 194

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 476 AAL*TRTAPRRPSKTT*EDLARTATATEWSTAMTTWRSTRREATGAPA 333
           A L TR   RRP++   +   R   A  W   +TTWR T  +  G P+
Sbjct: 90  ARLATRRRGRRPARRRRDCAWRRPAAWRW---LTTWRRTASKPDGYPS 134


>04_04_0351 + 24615858-24616448
          Length = 196

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 447 QTVQNYMRRFGQ-DCNGDGVVNCYDYMAIHKKGGYGCTG 334
           +T +   R  GQ D +GDG V+ ++++ + + GG+   G
Sbjct: 158 RTAEECRRMIGQVDRDGDGRVDFHEFLQMMRGGGFAALG 196


>11_04_0225 + 15087975-15088123,15088908-15089154
          Length = 131

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
 Frame = +3

Query: 396 RRRCSPGQIF-----SCSFGRSARRSTGLQCS 476
           RRRC P  +F     S  FGR+A RS+G  C+
Sbjct: 43  RRRCRPSMLFSPFSRSLGFGRNA-RSSGFGCT 73


>03_01_0320 - 2510907-2512190
          Length = 427

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 402 GDGVVNCYDYMAIHKKGGYGCTGEL 328
           GDGVV  YD  ++ K+G   C  E+
Sbjct: 364 GDGVVRVYDLPSLKKRGDIICDDEV 388


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,932,653
Number of Sequences: 37544
Number of extensions: 252649
Number of successful extensions: 580
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)