Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302F09f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11718| Best HMM Match : NHL (HMM E-Value=1.5e-12) 28 4.1
SB_21926| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_58033| Best HMM Match : HSA (HMM E-Value=3.2) 28 5.4
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 28 5.4
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 28 5.4
SB_984| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_16879| Best HMM Match : Stig1 (HMM E-Value=1) 27 7.1
SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38) 27 9.4
>SB_11718| Best HMM Match : NHL (HMM E-Value=1.5e-12)
Length = 85
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 435 NYMRRFGQDCNGDGVVNCYDYMAIHKKG 352
N++ FG NG G NC ++AI+ KG
Sbjct: 50 NHVTSFGSLGNGRGQFNCPSHVAINSKG 77
>SB_21926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/81 (25%), Positives = 37/81 (45%)
Frame = -1
Query: 506 SHLTLRMPTLAAL*TRTAPRRPSKTT*EDLARTATATEWSTAMTTWRSTRREATGAPANF 327
+HL + P + + A R + + +D+++TAT S AMTT+ + P
Sbjct: 2 THLIVITPAESLIDAIMATARHADRSVKDISQTATTLVRSVAMTTYLLKQNHQFATPNRS 61
Query: 326 LLTM*TCLTSASMSSRSTDLK 264
L+ +C S+ + SR K
Sbjct: 62 LM---SCTESSPILSRQRRTK 79
>SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -3
Query: 432 YMRRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVF 304
+++ G + +GDG ++ + +AI GY +L N ++VF
Sbjct: 923 FVKEIGSEGSGDGQLSFPESVAIMPNSGYIVVSDLSNNRIHVF 965
>SB_58033| Best HMM Match : HSA (HMM E-Value=3.2)
Length = 249
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 396 GVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQCINVFAQYRS 268
G NC +A+ K GG +G L + ++ F + V YRS
Sbjct: 23 GDFNCVSNLALDKWGGSALSGTLGYPALHTFLERFRVLDLYRS 65
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 27.9 bits (59), Expect = 5.4
Identities = 22/77 (28%), Positives = 31/77 (40%)
Frame = -1
Query: 497 TLRMPTLAAL*TRTAPRRPSKTT*EDLARTATATEWSTAMTTWRSTRREATGAPANFLLT 318
T+ T AA T AP + T E + A+ T + E T APA L T
Sbjct: 48 TMAPETTAAPVTTMAPETTAAPATTTALETTMVPETTAALET--TVASETTDAPATTLAT 105
Query: 317 M*TCLTSASMSSRSTDL 267
T +++ +TDL
Sbjct: 106 ETTAAPETTVAPETTDL 122
Score = 27.9 bits (59), Expect = 5.4
Identities = 22/77 (28%), Positives = 31/77 (40%)
Frame = -1
Query: 497 TLRMPTLAAL*TRTAPRRPSKTT*EDLARTATATEWSTAMTTWRSTRREATGAPANFLLT 318
T+ T AA T AP + T E + A+ T + E T APA L T
Sbjct: 1123 TMAPETTAAPVTTMAPETTAAPATTTALETTMVPETTAALET--TVASETTDAPATTLAT 1180
Query: 317 M*TCLTSASMSSRSTDL 267
T +++ +TDL
Sbjct: 1181 ETTAAPETTVAPETTDL 1197
Score = 27.1 bits (57), Expect = 9.4
Identities = 19/72 (26%), Positives = 29/72 (40%)
Frame = -1
Query: 488 MPTLAAL*TRTAPRRPSKTT*EDLARTATATEWSTAMTTWRSTRREATGAPANFLLTM*T 309
+PT + T P + + E A T + T + T + E TGAP L T
Sbjct: 2058 VPTETTVVPETTPALETTSAPESTAATESTVAPETTVPTEITAAPETTGAPDTTLAPETT 2117
Query: 308 CLTSASMSSRST 273
++M+ ST
Sbjct: 2118 VALESTMTPEST 2129
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 27.9 bits (59), Expect = 5.4
Identities = 22/77 (28%), Positives = 31/77 (40%)
Frame = -1
Query: 497 TLRMPTLAAL*TRTAPRRPSKTT*EDLARTATATEWSTAMTTWRSTRREATGAPANFLLT 318
T+ T AA T AP + T E + A+ T + E T APA L T
Sbjct: 2375 TMAPETTAAPVTTMAPETTAAPATTTALETTMVPETTAALET--TVASETTDAPATTLAT 2432
Query: 317 M*TCLTSASMSSRSTDL 267
T +++ +TDL
Sbjct: 2433 ETTAAPETTVAPETTDL 2449
>SB_984| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 450 AQTVQNYMRRFGQDCNGDGVVNCYD 376
A T Q Y F DCN G ++C D
Sbjct: 73 ASTCQGYRCIFDSDCNNGGYLSCCD 97
>SB_16879| Best HMM Match : Stig1 (HMM E-Value=1)
Length = 232
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 450 AQTVQNYMRRFGQDCNGDGVVNCYD 376
A T Q Y F DCN G ++C D
Sbjct: 73 ASTCQGYRCIFDSDCNNGGYLSCCD 97
>SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)
Length = 839
Score = 27.1 bits (57), Expect = 9.4
Identities = 19/72 (26%), Positives = 29/72 (40%)
Frame = -1
Query: 488 MPTLAAL*TRTAPRRPSKTT*EDLARTATATEWSTAMTTWRSTRREATGAPANFLLTM*T 309
+PT + T P + + E A T + T + T + E TGAP L T
Sbjct: 362 VPTETTVVPETTPALETTSAPESTAATESTVAPETTVPTEITAAPETTGAPDTTLAPETT 421
Query: 308 CLTSASMSSRST 273
++M+ ST
Sbjct: 422 VALESTMTPEST 433
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,344,236
Number of Sequences: 59808
Number of extensions: 314742
Number of successful extensions: 685
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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