Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302F09f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41547-6|AAA83197.1| 139|Caenorhabditis elegans Hypothetical pr... 42 3e-04
AF067611-3|AAC19179.1| 139|Caenorhabditis elegans Hypothetical ... 40 0.001
AF067611-4|AAC19181.1| 139|Caenorhabditis elegans Hypothetical ... 38 0.003
AF067611-5|AAC19180.1| 145|Caenorhabditis elegans Hypothetical ... 33 0.16
X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein. 32 0.22
U58747-4|AAF99902.2| 159|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z81479-10|CAB03945.2| 324|Caenorhabditis elegans Hypothetical p... 29 2.7
U40935-7|AAA81691.3| 338|Caenorhabditis elegans C.elegans homeo... 29 2.7
U01303-1|AAC46471.1| 338|Caenorhabditis elegans Ceh-20 protein. 29 2.7
AY552606-1|AAS89253.1| 324|Caenorhabditis elegans heparan sulfa... 29 2.7
AF000264-2|AAC71121.1| 761|Caenorhabditis elegans Half transpor... 29 2.7
Z83237-2|CAB05789.1| 258|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z37139-9|CAA85493.1| 396|Caenorhabditis elegans Hypothetical pr... 28 4.7
>U41547-6|AAA83197.1| 139|Caenorhabditis elegans Hypothetical
protein F22A3.6a protein.
Length = 139
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/64 (32%), Positives = 25/64 (39%)
Frame = -3
Query: 486 AYSSCTVDPYCAAQTVQNYMRRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNV 307
A+ C D CA V+NY R+ CNG G+ C H G GC Y N
Sbjct: 72 AWKRCADDLNCATTCVENYYNRYKSQCNGLGMGACQIMSRNHNGGPRGCHNANTLAYWNG 131
Query: 306 FNQC 295
C
Sbjct: 132 VKSC 135
>AF067611-3|AAC19179.1| 139|Caenorhabditis elegans Hypothetical
protein C45G7.3 protein.
Length = 139
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/64 (31%), Positives = 23/64 (35%)
Frame = -3
Query: 486 AYSSCTVDPYCAAQTVQNYMRRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNV 307
A+ C D CA V+NY R+ C G G C H G GC Y N
Sbjct: 72 AWKRCANDLSCATTCVENYYNRYKSQCAGTGQGACEVMARNHNGGPQGCKHSGTLGYWNG 131
Query: 306 FNQC 295
C
Sbjct: 132 IKSC 135
>AF067611-4|AAC19181.1| 139|Caenorhabditis elegans Hypothetical
protein C45G7.2 protein.
Length = 139
Score = 38.3 bits (85), Expect = 0.003
Identities = 19/64 (29%), Positives = 24/64 (37%)
Frame = -3
Query: 486 AYSSCTVDPYCAAQTVQNYMRRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNV 307
A+ C D CA V+NY R+ +C G G C H G GC Y
Sbjct: 72 AWKRCADDLKCATNCVENYYNRYKHECAGTGQGACEVMARNHNGGPRGCHASGTLGYWKG 131
Query: 306 FNQC 295
+ C
Sbjct: 132 VHSC 135
>AF067611-5|AAC19180.1| 145|Caenorhabditis elegans Hypothetical
protein C45G7.1 protein.
Length = 145
Score = 32.7 bits (71), Expect = 0.16
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 486 AYSSCTVDPYCAAQTVQNYMRRFGQDCNGDGVVNC 382
A+ C D CA + NY R+ CNG G+ C
Sbjct: 54 AWKRCADDLDCAETCMMNYYHRYKSQCNGLGMSEC 88
Score = 32.3 bits (70), Expect = 0.22
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = -3
Query: 456 CAAQTVQNYMRRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQC 295
C A + QNY R+ C+G G+ C + H G GC Y +C
Sbjct: 88 CEA-SFQNYYHRYKSQCDGLGMGECEVFARNHNGGPTGCRNPGTLEYWQSIQKC 140
>X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein.
Length = 693
Score = 32.3 bits (70), Expect = 0.22
Identities = 26/83 (31%), Positives = 36/83 (43%)
Frame = -1
Query: 521 PLSMVSHLTLRMPTLAAL*TRTAPRRPSKTT*EDLARTATATEWSTAMTTWRSTRREATG 342
PL+ + + +PT + T P PSKTT T T TA TT ST T
Sbjct: 365 PLTTTTEVISDVPTTTVQTSTTVPTTPSKTT-ATTTTTPKPTTTETA-TTSSSTTTVTTQ 422
Query: 341 APANFLLTM*TCLTSASMSSRST 273
P T T+AS ++++T
Sbjct: 423 KPTTVTSTTTLPSTTASTTTKTT 445
>U58747-4|AAF99902.2| 159|Caenorhabditis elegans Hypothetical
protein C55F2.2 protein.
Length = 159
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = -3
Query: 489 DAYSSCTVDPYCAAQTVQNYMRRFGQDCNGDGVVNCYDYMAIHKKGGYGC 340
+A+ +C D C+A ++ +F C G C IH G GC
Sbjct: 83 EAWMNCAQDYQCSASCIRTLATKFRVKCYGKS--ECETIARIHDGGANGC 130
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 29.1 bits (62), Expect = 2.0
Identities = 24/72 (33%), Positives = 31/72 (43%)
Frame = -1
Query: 488 MPTLAAL*TRTAPRRPSKTT*EDLARTATATEWSTAMTTWRSTRREATGAPANFLLTM*T 309
+PT + T P PSKTT T T TA TT ST T P T
Sbjct: 495 VPTTTVQTSTTVPTTPSKTT-ATTTTTPKPTTTETA-TTSSSTTTVTTQKPTTVTSTTTL 552
Query: 308 CLTSASMSSRST 273
T+AS ++++T
Sbjct: 553 PSTTASTTTKTT 564
>Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical
protein C29E6.1b protein.
Length = 653
Score = 29.1 bits (62), Expect = 2.0
Identities = 24/72 (33%), Positives = 31/72 (43%)
Frame = -1
Query: 488 MPTLAAL*TRTAPRRPSKTT*EDLARTATATEWSTAMTTWRSTRREATGAPANFLLTM*T 309
+PT + T P PSKTT T T TA TT ST T P T
Sbjct: 336 VPTTTVQTSTTVPTTPSKTT-ATTTTTPKPTTTETA-TTSSSTTTVTTQKPTTVTSTTTL 393
Query: 308 CLTSASMSSRST 273
T+AS ++++T
Sbjct: 394 PSTTASTTTKTT 405
>Z81479-10|CAB03945.2| 324|Caenorhabditis elegans Hypothetical
protein C34F6.4 protein.
Length = 324
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 184 WKL*LTDYHKAVVGYSKFVRFSIRQSYLRSVLREDIDALVKHVYIVK 324
W L ++ V + F RF I +++RE ++ L+ H Y ++
Sbjct: 98 WTERLPAFYHGHVAFIDFQRFGIANPIYINIIREPLERLLSHYYFLR 144
>U40935-7|AAA81691.3| 338|Caenorhabditis elegans C.elegans homeobox
protein 20 protein.
Length = 338
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 196 LTDYHKAVVGYSKFVRFSIR-QSYLRSVLREDIDALVKHVYIVKRKFAGAPV 348
L Y +A +++ VR ++ QS +R + ++I+ +V YI++RKF G V
Sbjct: 120 LRKYEEACNEFTQHVRSLLKDQSQVRPIAHKEIERMV---YIIQRKFNGIQV 168
>U01303-1|AAC46471.1| 338|Caenorhabditis elegans Ceh-20 protein.
Length = 338
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 196 LTDYHKAVVGYSKFVRFSIR-QSYLRSVLREDIDALVKHVYIVKRKFAGAPV 348
L Y +A +++ VR ++ QS +R + ++I+ +V YI++RKF G V
Sbjct: 120 LRKYEEACNEFTQHVRSLLKDQSQVRPIAHKEIERMV---YIIQRKFNGIQV 168
>AY552606-1|AAS89253.1| 324|Caenorhabditis elegans heparan sulfate
2O-sulfotransferase protein.
Length = 324
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 184 WKL*LTDYHKAVVGYSKFVRFSIRQSYLRSVLREDIDALVKHVYIVK 324
W L ++ V + F RF I +++RE ++ L+ H Y ++
Sbjct: 98 WTERLPAFYHGHVAFIDFQRFGIANPIYINIIREPLERLLSHYYFLR 144
>AF000264-2|AAC71121.1| 761|Caenorhabditis elegans Half transporter
(pgp related)protein 2 protein.
Length = 761
Score = 28.7 bits (61), Expect = 2.7
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +1
Query: 310 VYIVKRKFAG---APVASLLVDRHVVIAVDHSVAVAVLAKSSHVVLDGLRGAVRVYSAAR 480
VY + R F A V S +V++ + A+ HS+ V ++ + GLRG Y+ A
Sbjct: 208 VYALARVFIPNYTAQVISDIVNKRGIQALIHSIIVLTCLTATSSLFGGLRGGCFDYATAL 267
Query: 481 VGIR 492
V +R
Sbjct: 268 VTLR 271
>Z83237-2|CAB05789.1| 258|Caenorhabditis elegans Hypothetical
protein R06B9.2 protein.
Length = 258
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -1
Query: 464 TRTAPRRPSKTT*EDLARTATATEWSTAMTTWRSTRREATGAPANF 327
T+T + S+T + TATA TA+ WR T + A P +
Sbjct: 57 TKTNSKGESETKTHTVHYTATAKHLDTAVPLWRKTDKAARLLPGKY 102
>Z37139-9|CAA85493.1| 396|Caenorhabditis elegans Hypothetical
protein C14B1.5 protein.
Length = 396
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = -3
Query: 483 YSSCTVDPYCAAQTVQNYMRRFGQDC-----NGDGVVNCYDYMAIH 361
Y +C VD Y A + + +G C N DG+ Y ++ IH
Sbjct: 86 YGACCVDDYTAKSMGCDLLVHYGHSCLVPIQNTDGIAMLYVFVNIH 131
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,669,624
Number of Sequences: 27780
Number of extensions: 237503
Number of successful extensions: 513
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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