Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F09f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g58227.1 68414.m06616 hypothetical protein                          30   0.82 
At1g23890.2 68414.m03013 NHL repeat-containing protein contains ...    28   4.4  
At3g07490.1 68416.m00893 calcium-binding protein, putative simil...    27   7.7  
At1g20800.1 68414.m02605 F-box family protein contains Pfam:PF00...    27   7.7  

>At1g58227.1 68414.m06616 hypothetical protein
          Length = 1323

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -3

Query: 402 GDGVVNCYDYMAIHKKGGYGCTGELPFNYV--NVFNQCINV 286
           GDG +  + +M+ + KG +   G+   +YV  N+  QC+NV
Sbjct: 486 GDGKMGIFSFMSKNGKGCFAALGKDGLSYVSLNLKRQCVNV 526


>At1g23890.2 68414.m03013 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 400

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +1

Query: 184 WKL*LTDYHKAVVGYSKFVRFSIRQSYLRSVLREDIDALVKHVYIV 321
           WKL LT   + V+ +  ++R  + +S + SVL   +  +V H+ ++
Sbjct: 242 WKLLLTKLGEQVLTFFSYIRNRVAESTVYSVLSRLVMMIVSHLSLM 287


>At3g07490.1 68416.m00893 calcium-binding protein, putative similar
           to calcium-binding protein GI:6580549 from [Lotus
           japonicus]
          Length = 153

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 447 QTVQNYMRRFGQ-DCNGDGVVNCYDYMAIHKKGGYGCTG 334
           +T+++  R   + D +GDG+VN  ++  + K GG+   G
Sbjct: 112 RTLEDCKRMISKVDVDGDGMVNFKEFKQMMKGGGFAALG 150


>At1g20800.1 68414.m02605 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 492

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 414 QDCNGDGVVNCYDYMA 367
           +DCN DGV++ YD+ A
Sbjct: 47  KDCNDDGVIHGYDFKA 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,719,414
Number of Sequences: 28952
Number of extensions: 210978
Number of successful extensions: 449
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)