Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F07f
         (398 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719...   133   6e-32
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460...    59   1e-09
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590     57   6e-09
04_04_0303 + 24269467-24270741                                         31   0.25 
03_02_0238 - 6687334-6687421,6687456-6687512,6688266-6688351,668...    27   5.5  
12_01_0045 - 354825-355504,355602-355776,355847-355927,357266-35...    27   7.2  
08_01_0392 - 3454224-3454325,3454926-3455035,3455496-3455609,345...    27   7.2  
06_01_0462 - 3285667-3288123                                           26   9.5  

>04_03_0487 +
           16471538-16471540,16471694-16471795,16471880-16471908,
           16472619-16472745
          Length = 86

 Score =  133 bits (321), Expect = 6e-32
 Identities = 58/78 (74%), Positives = 65/78 (83%)
 Frame = +2

Query: 23  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 202
           IDLL+P    E+ KHK KRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC GC T+LC
Sbjct: 7   IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLC 66

Query: 203 QPTGGRARLTEGCSFRRK 256
           QPTGG+ARLTEGCSFRRK
Sbjct: 67  QPTGGKARLTEGCSFRRK 84


>02_03_0220 +
           16545571-16545573,16545717-16545818,16545980-16546008,
           16549421-16553036
          Length = 1249

 Score = 58.8 bits (136), Expect = 1e-09
 Identities = 26/46 (56%), Positives = 32/46 (69%)
 Frame = +2

Query: 23  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHA 160
           IDLL+P    E+ KHK KRLV  PNS+FMDVKC GC+ ++  F  A
Sbjct: 7   IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNMSVRFDIA 52


>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
          Length = 45

 Score = 56.8 bits (131), Expect = 6e-09
 Identities = 24/39 (61%), Positives = 29/39 (74%)
 Frame = +2

Query: 23  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKI 139
           IDLL+P    E+ KHK KRLV  PNS+FMDVKC GC+ +
Sbjct: 7   IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFSM 45


>04_04_0303 + 24269467-24270741
          Length = 424

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 22/68 (32%), Positives = 32/68 (47%)
 Frame = +2

Query: 20  AIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 199
           A+ LLHP          L  ++PH  S  +D  CP  Y+I ++     RVV    C+++ 
Sbjct: 148 AVRLLHPFTGDTAELPPLGTVLPHLGSRLLD--CPAPYRIRSL----ARVV----CASVS 197

Query: 200 CQPTGGRA 223
           C  TG  A
Sbjct: 198 CSATGAGA 205


>03_02_0238 -
           6687334-6687421,6687456-6687512,6688266-6688351,
           6688410-6688589
          Length = 136

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 128 CYKITTVFSHAQRVVVCAGCSTILCQPTGGR 220
           CYKI+ ++SH Q ++    C  IL +PTG R
Sbjct: 96  CYKISKIYSHGQSLL----CLDIL-RPTGRR 121


>12_01_0045 -
           354825-355504,355602-355776,355847-355927,357266-357498,
           357921-358104
          Length = 450

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -3

Query: 363 RWIHCSELEKYHSI 322
           RWIH SELE+ H+I
Sbjct: 416 RWIHHSELEEVHTI 429


>08_01_0392 -
           3454224-3454325,3454926-3455035,3455496-3455609,
           3455930-3456043,3456474-3456531
          Length = 165

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +2

Query: 92  PNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGG 217
           PN     + C GC  +  ++      V CA CST+   P  G
Sbjct: 18  PNGAQSQLVCSGCRNLL-MYPAGATSVCCAVCSTVTAVPAPG 58



 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 158 AQRVVVCAGCSTILCQPTGGRARLTEGCS 244
           AQ  +VC+GC  +L  P G  +     CS
Sbjct: 21  AQSQLVCSGCRNLLMYPAGATSVCCAVCS 49


>06_01_0462 - 3285667-3288123
          Length = 818

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 276 LDRALFNFKIFFPIV*WSDIFQV 344
           LDR LF++   FP++ WS  + +
Sbjct: 614 LDRLLFDYHNLFPVLKWSQRYNI 636


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,642,376
Number of Sequences: 37544
Number of extensions: 196615
Number of successful extensions: 466
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)