Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302F07f
(398 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 33 0.11
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38) 29 1.8
SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_29258| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_9739| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_43858| Best HMM Match : TPR_2 (HMM E-Value=0.0013) 27 7.4
SB_35100| Best HMM Match : TPR_2 (HMM E-Value=0.0013) 27 7.4
SB_49756| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
SB_35019| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45) 26 9.8
SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
SB_18584| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 32.7 bits (71), Expect = 0.11
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +2
Query: 29 LLHPSPA-SERRKHKL-KRLVPHPNSYFMDVKCPGCYKITTVFSHAQRV 169
L H P S R K + KR P P ++K P Y++TT+ +H+ RV
Sbjct: 411 LTHSVPIISGRLKTSMNKRTKPKPGERATEIKSPSTYQVTTMVTHSPRV 459
>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
Length = 525
Score = 28.7 bits (61), Expect = 1.8
Identities = 8/25 (32%), Positives = 18/25 (72%)
Frame = +2
Query: 185 CSTILCQPTGGRARLTEGCSFRRKQ 259
C ++CQ + ++R T+GC ++R++
Sbjct: 230 CEVLVCQRSDKKSRCTKGCPYQRRR 254
>SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 614
Score = 27.5 bits (58), Expect = 4.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 116 KCPGCYKITTVFSHAQRVVVCAGC 187
+CP CY ++ V + Q V C+ C
Sbjct: 208 RCPRCYPMSKVLPNVQGVTQCSRC 231
Score = 26.6 bits (56), Expect = 7.4
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = +2
Query: 59 RKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGC 187
R + + +++P+ + +CP CY ++ V Q V C C
Sbjct: 306 RCYPVSKVLPNVRGF---TQCPRCYPVSKVLPSVQGVTRCPRC 345
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +2
Query: 116 KCPGCYKITTVFSHAQRVVVCAGC 187
+CP CY ++ V Q V C C
Sbjct: 341 RCPRCYPVSKVLPGVQGVTQCPRC 364
>SB_29258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 487
Score = 27.5 bits (58), Expect = 4.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 71 LKRLVPHPNSYFMDVKCPGCYKI 139
++RLVP NSY + + GC I
Sbjct: 95 VRRLVPRTNSYILSIDLEGCTSI 117
>SB_9739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1552
Score = 27.5 bits (58), Expect = 4.3
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Frame = +2
Query: 2 IRHEALAIDLLHPSPAS------ERRKHKLKRLVPHPNS--YFMDVKCPGCYKITTVFSH 157
IR E L ID + P + E+ ++KL P P + CPGC K +F+
Sbjct: 198 IRREVLGIDGILEKPINQVIAVVEKTENKLTAPAPSPPQADQAKEATCPGCQKTFKLFTE 257
Query: 158 AQR 166
R
Sbjct: 258 GAR 260
>SB_43858| Best HMM Match : TPR_2 (HMM E-Value=0.0013)
Length = 517
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 87 HILTLISWMLSALAVTRLQQFLVTHREWWSALD 185
H T + W+L ++ + Q + +R+W SA D
Sbjct: 473 HQATAVWWVLPSVLYSNRAQCYINNRDWQSAAD 505
>SB_35100| Best HMM Match : TPR_2 (HMM E-Value=0.0013)
Length = 158
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 87 HILTLISWMLSALAVTRLQQFLVTHREWWSALD 185
H T + W+L ++ + Q + +R+W SA D
Sbjct: 114 HQATAVWWVLPSVLYSNRAQCYINNRDWQSAAD 146
>SB_49756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 5 RHEALAIDLLHPSPASERRKH 67
+HE+LA LL+PS ++ R +H
Sbjct: 171 QHESLADSLLNPSSSASRSRH 191
>SB_35019| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
Length = 412
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 90 ILTLISWMLSALAVTRLQQFLVTHREWWSALDAQRS 197
+ L+S+ L LAV + L+ HR W+S + + +
Sbjct: 207 LCVLVSFYLIPLAVMAVLYALIAHRLWFSRIPVENA 242
>SB_24442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 172 HHSLCVTKNCCNLVTARALNIHEIRVR 92
HHS+ + K C VT+ +L+ H + R
Sbjct: 201 HHSMNLEKKCATRVTSESLDSHSSKDR 227
>SB_18584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1022
Score = 26.2 bits (55), Expect = 9.8
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 80 LVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 202
L H N+ D+KC C + Q + CA CS LC
Sbjct: 472 LAIHSNASRKDLKCENCN------NKKQAIARCAHCSVFLC 506
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,967,744
Number of Sequences: 59808
Number of extensions: 218924
Number of successful extensions: 529
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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