Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F07f
         (398 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)           138   1e-33
At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A) iden...   135   9e-33
At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)           130   4e-31
At2g44870.1 68415.m05586 expressed protein                             30   0.49 
At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia l...    27   4.6  
At3g56410.2 68416.m06274 expressed protein                             27   6.1  
At3g56410.1 68416.m06273 expressed protein                             27   6.1  
At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transfera...    26   8.0  

>At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)
          Length = 84

 Score =  138 bits (335), Expect = 1e-33
 Identities = 59/78 (75%), Positives = 66/78 (84%)
 Frame = +2

Query: 23  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 202
           IDLLHP P  E+RKHKLKRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC  C T+LC
Sbjct: 7   IDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLC 66

Query: 203 QPTGGRARLTEGCSFRRK 256
           QPTGG+ARL EGCSFR+K
Sbjct: 67  QPTGGKARLQEGCSFRKK 84


>At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A)
           identical to cDNA ribosomal protein S27 (ARS27A)
           GI:4193381
          Length = 86

 Score =  135 bits (327), Expect = 9e-33
 Identities = 59/78 (75%), Positives = 66/78 (84%)
 Frame = +2

Query: 23  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 202
           IDLL+P    E+RKHKLKRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC  C TILC
Sbjct: 7   IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILC 66

Query: 203 QPTGGRARLTEGCSFRRK 256
           QPTGG+A+LTEGCSFRRK
Sbjct: 67  QPTGGKAKLTEGCSFRRK 84


>At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)
          Length = 84

 Score =  130 bits (313), Expect = 4e-31
 Identities = 55/78 (70%), Positives = 65/78 (83%)
 Frame = +2

Query: 23  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 202
           IDLL+P    E+RKHKLKRLV  PNS+FMDVKC GC+ ITTVFSH+Q VV+C  C T+LC
Sbjct: 7   IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLC 66

Query: 203 QPTGGRARLTEGCSFRRK 256
            PTGG+A+LTEGCSFR+K
Sbjct: 67  TPTGGKAKLTEGCSFRKK 84


>At2g44870.1 68415.m05586 expressed protein
          Length = 248

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 95  NSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTG 214
           N++ +  +CP C +      +  +++ C GC  I+ QP G
Sbjct: 175 NNFVIKGECPACKR--QFIGYKNQIIRCEGCGNIVWQPQG 212


>At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia
           ligase, putative similar to SP|P17812 CTP synthase (EC
           6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
           Pfam profile PF00117: glutamine amidotransferase class-I
          Length = 556

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 142 CNLVTARALNIHEIRVRMWH*PLKL 68
           C++  A  LNIH++   +WH PL L
Sbjct: 234 CHVAAANILNIHDV-PNIWHVPLLL 257


>At3g56410.2 68416.m06274 expressed protein
          Length = 1535

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 77  RLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 199
           R VP  +S    V+CP C+K+      A     C GC +IL
Sbjct: 55  RTVPGLSSQSRIVRCPKCHKLLQEPLDATS-YKCGGCDSIL 94


>At3g56410.1 68416.m06273 expressed protein
          Length = 1488

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 77  RLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 199
           R VP  +S    V+CP C+K+      A     C GC +IL
Sbjct: 8   RTVPGLSSQSRIVRCPKCHKLLQEPLDATS-YKCGGCDSIL 47


>At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 496

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 71  LKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 202
           ++ + P P+    D+  P   KI   FS  + V    GC  +LC
Sbjct: 117 MEEMKPRPSCIISDLLLPYTSKIARKFSIPKIVFHGTGCFNLLC 160


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,403,295
Number of Sequences: 28952
Number of extensions: 153498
Number of successful extensions: 362
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)