Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302F06f
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    30   0.24 
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.8  

>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 188 GRLVDFDDRERALAPAEVRFPWRAAGADGERGHREYERYHPMPHNWFY 45
           G++++ +D E  LA   +R PW +A     RGH  Y   +  P+  FY
Sbjct: 462 GKIIEGNDVEGVLA---IRSPWPSAARTVWRGHDRYIDTYLKPYPGFY 506


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/86 (19%), Positives = 32/86 (37%)
 Frame = +3

Query: 243 WNVWTGDAADKSRVLLDKKEVWSGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVE 422
           W ++   A  +++  L + E +   GS ++ A     GG Y        S   ++     
Sbjct: 94  WQIYFNGATSQNQGSLAQSEQFDFEGSDSTLAASTISGGIYSSTSASSTSSSTATPSSSS 153

Query: 423 IVVADTDGSHLRPLDYSIGEKITXQA 500
              + +  S   P+  SI   I+  A
Sbjct: 154 TTSSSSSSSSSTPISSSITSSISSSA 179


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
 Frame = -1

Query: 442 SVSATTISTPSLELHPSELQSSTCIWYLPPFFTLKAADVALPAPLQT--SFLSSRTLDLS 269
           S S+ + S P      S L SST     P   +  ++  +  AP  T  S+LSS ++  S
Sbjct: 160 SSSSLSSSDPLTSSTFSSLSSSTSSSQ-PSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSS 218

Query: 268 AASPVHTFQLTETSAASFLVTSWL*AVAAWLTSTIANVRS 149
           ++SP  +   T TS  S L TS + + ++  +ST +++ S
Sbjct: 219 SSSPSSSSSSTLTS--SSLSTSSIPSTSSSSSSTSSSLSS 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,752,272
Number of Sequences: 5004
Number of extensions: 29278
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)